←Back to structures

DNA-directed_RNA_polymerase_subunit_2

Euk-Vir

Noumeavirus

DNA-directed_RNA_polymerase_subunit_2__YP_009345581__Noumeavirus__1955558

Identity

Accession:: YP_009345581 ↗
Protein ID:: DNA-directed_RNA_polymerase_subunit_2
Kingdom:: euk

Quality

72.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Noumeavirus

TaxID: 1955558

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 200-352

PDB

Domain cluster: rep: DNA-directed_RNA_polymerase_subunit_B__YP_009021104__Anopheles_minimus_iridovirus__1465751__D170-274

D2 medium residues 19-46_176-199_362-503

PDB

Domain cluster: rep: RNA_polymerase_subunit_RPO132__YP_009177160__Turkeypox_virus__336486__D16-42_128-166_348-436

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04565.22 best	RNA_pol_Rpb2_3	45.4	1.00e-11	33.5%	98.5%

D3 medium residues 504-659

PDB

Domain cluster: rep: RNA_polymerase_RPO132__YP_008004199__Choristoneura_biennis_entomopoxvirus__10288__D504-695

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04566.19 best	RNA_pol_Rpb2_4	57.5	1.60e-15	39.7%	98.4%
PF04567.23	RNA_pol_Rpb2_5	38.7	2.00e-09	27.6%	100.0%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3og5A01	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.51	26.0	3.32e-01	71.8%	84.7%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4948672	4961.1.1.1 ↗	a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4	0.90	69.0	7.24e-01	78.2%	87.4%
4855745	4961.1.1.1 ↗	a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4	0.80	51.0	6.37e-01	91.0%	100.0%

D4 medium residues 695-736_760-824_877-959

PDB

Domain cluster: rep: DNA-directed_RNA_polymerase_subunit_2__YP_004346997__Lausannevirus__999883__D687-725_760-784_873-962

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00562.34 best	RNA_pol_Rpb2_6	46.6	3.90e-12	63.2%	28.1%

D5 medium residues 737-759_960-1019_1072-1127

PDB

Domain cluster: rep: LC779065.1__BES79950.1__X__00177__D663-844

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00562.34 best	RNA_pol_Rpb2_6	100.8	1.30e-28	85.6%	31.6%

D6 medium residues 1128-1179

PDB

D7 medium residues 1180-1243

PDB

Domain cluster: rep: IMGVR_UViG_3300025836_000142-3300025836-Ga0209748_10097103__D124-188

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04560.26 best	RNA_pol_Rpb2_7	42.1	1.30e-10	100.0%	65.5%