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DNA-directed_RNA_polymerase_subunit_A
Euk-VirKaumoebavirus_Viruses.
DNA-directed_RNA_polymerase_subunit_A__YP_009352525__Kaumoebavirus_Viruses.__X
Identity
- Accession:
- YP_009352525 ↗
- Protein ID:
- DNA-directed_RNA_polymerase_subunit_A
- Kingdom:
- euk
Quality
77.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 86-200
D2
medium
residues 15-85_201-214
Domain cluster:
rep: pig_ID_3158_F95_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00084__D6-65_144-157
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04997.18 best | RNA_pol_Rpb1_1 | 55.8 | 6.90e-15 | 92.9% | 23.1% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4chiA02 | 3.20.10.10 | Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 | 0.54 | 35.0 | 2.76e-01 | 89.4% | 31.8% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4380798 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.99 | 96.0 | 6.11e-01 | 100.0% | 66.5% |
| 4069919 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.98 | 95.0 | 5.69e-01 | 100.0% | 69.3% |
| 3270404 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.98 | 95.0 | 5.81e-01 | 100.0% | 75.3% |
| 3610049 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.98 | 95.0 | 5.97e-01 | 100.0% | 67.5% |
| 3737421 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.98 | 95.0 | 5.82e-01 | 100.0% | 69.9% |
| 3293738 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.98 | 95.0 | 5.87e-01 | 100.0% | 71.2% |
| 3550786 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.98 | 94.0 | 5.76e-01 | 100.0% | 71.2% |
| 3596097 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.98 | 94.0 | 6.04e-01 | 100.0% | 65.6% |
| 4932731 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.97 | 94.0 | 6.13e-01 | 100.0% | 63.4% |
| 4877330 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.97 | 93.0 | 6.17e-01 | 100.0% | 68.9% |
| 4079870 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.97 | 93.0 | 5.86e-01 | 100.0% | 66.5% |
| 4648965 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.97 | 93.0 | 5.95e-01 | 100.0% | 64.2% |
| 3393665 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.97 | 93.0 | 5.86e-01 | 100.0% | 68.9% |
| 3348138 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.97 | 93.0 | 5.88e-01 | 100.0% | 67.0% |
| 5000427 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.97 | 91.0 | 5.83e-01 | 97.6% | 77.5% |
| 1117727 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.96 | 93.0 | 5.75e-01 | 100.0% | 72.9% |
| 4023558 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.96 | 93.0 | 5.87e-01 | 100.0% | 68.7% |
| 3618547 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.96 | 93.0 | 5.63e-01 | 100.0% | 75.6% |
| 4015766 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.96 | 93.0 | 5.75e-01 | 100.0% | 69.7% |
| 4027469 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.96 | 93.0 | 5.91e-01 | 100.0% | 66.1% |
| 3166784 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.96 | 92.0 | 5.77e-01 | 100.0% | 67.6% |
| 3722540 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.96 | 92.0 | 5.67e-01 | 100.0% | 74.1% |
| 3482979 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.96 | 92.0 | 5.67e-01 | 100.0% | 71.0% |
| 3479543 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.96 | 92.0 | 5.82e-01 | 100.0% | 69.4% |
| 3409846 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.96 | 93.0 | 5.67e-01 | 100.0% | 70.5% |
| 3205937 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.96 | 92.0 | 5.57e-01 | 100.0% | 74.2% |
| 3185006 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.96 | 92.0 | 5.83e-01 | 100.0% | 67.1% |
| 3928969 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.95 | 91.0 | 5.57e-01 | 100.0% | 70.0% |
| 3487002 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.95 | 91.0 | 5.79e-01 | 100.0% | 67.2% |
| 4838956 | 4246.1.1.4 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_2, RNA_pol_Rpb1_1 | 0.94 | 78.0 | 5.71e-01 | 85.9% | 85.8% |
| 4803223 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.94 | 90.0 | 5.90e-01 | 100.0% | 67.8% |
| 2126128 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.93 | 78.0 | 6.34e-01 | 85.9% | 52.5% |
| 5026630 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.93 | 89.0 | 5.73e-01 | 100.0% | 64.6% |
| 3520695 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.91 | 87.0 | 5.42e-01 | 100.0% | 74.6% |
| 2150553 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.90 | 84.0 | 5.38e-01 | 100.0% | 72.3% |
| 4809191 | 4246.1.1.4 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_2, RNA_pol_Rpb1_1 | 0.89 | 73.0 | 5.18e-01 | 85.9% | 86.9% |
| 3717545 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.89 | 85.0 | 5.46e-01 | 100.0% | 71.0% |
| 3596876 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.89 | 85.0 | 5.43e-01 | 100.0% | 70.0% |
| 4871979 | 4246.1.1.4 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_2, RNA_pol_Rpb1_1 | 0.89 | 73.0 | 5.28e-01 | 85.9% | 77.6% |
| 4826128 | 4246.1.1.4 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_2, RNA_pol_Rpb1_1 | 0.88 | 72.0 | 6.56e-01 | 85.9% | 70.1% |
| 3699234 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.86 | 71.0 | 4.98e-01 | 85.9% | 84.1% |
| 4388548 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.84 | 79.0 | 4.76e-01 | 100.0% | 77.1% |
| 4090024 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.84 | 78.0 | 5.07e-01 | 100.0% | 68.4% |
| 4513601 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.84 | 79.0 | 4.69e-01 | 100.0% | 51.5% |
| 4410658 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.83 | 78.0 | 4.86e-01 | 100.0% | 73.5% |
| 4261674 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.83 | 78.0 | 5.14e-01 | 100.0% | 66.8% |
| 4196271 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.83 | 78.0 | 4.90e-01 | 100.0% | 71.4% |
| 4887352 | 4246.1.1.4 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_2, RNA_pol_Rpb1_1 | 0.83 | 78.0 | 5.07e-01 | 100.0% | 74.2% |
| 4349885 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.83 | 78.0 | 4.54e-01 | 100.0% | 44.1% |
| 4801458 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.83 | 77.0 | 5.25e-01 | 100.0% | 70.4% |
| 3642267 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.83 | 79.0 | 5.13e-01 | 100.0% | 72.4% |
| 4367766 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.83 | 78.0 | 4.84e-01 | 100.0% | 71.4% |
| 4469646 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.82 | 77.0 | 5.02e-01 | 100.0% | 68.9% |
| 4228406 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.82 | 77.0 | 5.18e-01 | 100.0% | 63.5% |
| 3802624 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.82 | 79.0 | 5.17e-01 | 100.0% | 71.2% |
| 4036245 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.82 | 77.0 | 4.82e-01 | 100.0% | 74.5% |
| 4344997 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.81 | 77.0 | 4.89e-01 | 100.0% | 64.5% |
| 4629506 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.81 | 75.0 | 4.95e-01 | 100.0% | 67.6% |
| 4287168 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.80 | 74.0 | 4.52e-01 | 100.0% | 74.5% |
| 4001161 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.76 | 72.0 | 4.57e-01 | 100.0% | 68.2% |
| 2886103 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.75 | 69.0 | 4.89e-01 | 100.0% | 64.9% |
| 4876841 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.74 | 68.0 | 4.74e-01 | 100.0% | 76.3% |
| 3966866 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.65 | 38.0 | 2.84e-01 | 81.2% | 23.5% |
D3
medium
residues 319-342_403-454
Domain cluster:
rep: pre1_saliva_scaffold_4_prodigal-single.1__X__X__00164__D318-340_395-440
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00623.26 best | RNA_pol_Rpb1_2 | 33.6 | 6.60e-08 | 69.7% | 28.3% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfA03 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.90 | 79.0 | 7.01e-01 | 96.1% | 69.3% |
| 1ynjD04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.83 | 74.0 | 5.88e-01 | 96.1% | 77.9% |
| 7eu1A01 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.83 | 73.0 | 5.88e-01 | 96.1% | 66.2% |
| 3hu1A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.81 | 71.0 | 6.50e-01 | 96.1% | 75.0% |
| 1cr5A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.77 | 62.0 | 6.26e-01 | 96.1% | 85.7% |
| 1qcsA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.75 | 63.0 | 6.17e-01 | 96.1% | 84.1% |
| 1wlfA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.75 | 63.0 | 6.10e-01 | 96.1% | 83.3% |
| 1dmrA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.74 | 65.0 | 5.04e-01 | 96.1% | 73.6% |
| 7nz1G01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.74 | 66.0 | 6.09e-01 | 96.1% | 91.7% |
| 2vpzA05 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.74 | 65.0 | 5.05e-01 | 96.1% | 74.2% |
| 2ki8A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.72 | 65.0 | 5.49e-01 | 100.0% | 76.0% |
| 1zc1A01 | 2.40.40.50 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain | 0.71 | 61.0 | 5.55e-01 | 96.1% | 82.5% |
| 1ogyA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.71 | 62.0 | 5.24e-01 | 96.1% | 86.2% |
| 1yleA02 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.71 | 48.0 | 5.12e-01 | 96.1% | 81.5% |
| 1n10A01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.68 | 59.0 | 5.16e-01 | 96.1% | 86.0% |
| 4avrA00 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.67 | 58.0 | 5.46e-01 | 96.1% | 87.2% |
| 3sqfA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.66 | 54.0 | 5.09e-01 | 92.1% | 86.3% |
| 1yg9A03 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.62 | 50.0 | 4.33e-01 | 88.2% | 82.9% |
| 3slzA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.61 | 52.0 | 4.59e-01 | 96.1% | 74.6% |
| 2ae0X01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.58 | 49.0 | 3.79e-01 | 96.1% | 49.4% |
ECOD (82)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4556003 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.89 | 75.0 | 7.30e-01 | 96.1% | 80.7% |
| 3509068 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.89 | 81.0 | 5.77e-01 | 96.1% | 73.5% |
| 4015760 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.88 | 80.0 | 5.75e-01 | 96.1% | 75.9% |
| 3698542 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.88 | 80.0 | 5.67e-01 | 96.1% | 73.2% |
| 3836120 | 275.1.1.1 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 | 0.88 | 80.0 | 5.74e-01 | 96.1% | 78.5% |
| 3360997 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.88 | 80.0 | 6.27e-01 | 96.1% | 63.4% |
| 3684523 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.88 | 80.0 | 6.60e-01 | 96.1% | 59.2% |
| 3596090 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.88 | 80.0 | 6.70e-01 | 96.1% | 63.3% |
| 4948679 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.88 | 80.0 | 5.07e-01 | 96.1% | 41.4% |
| 5058903 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.88 | 80.0 | 5.76e-01 | 96.1% | 73.7% |
| 4943460 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.88 | 80.0 | 5.80e-01 | 96.1% | 73.0% |
| 5081033 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.88 | 80.0 | 5.67e-01 | 96.1% | 70.0% |
| 3670775 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.88 | 80.0 | 6.68e-01 | 96.1% | 61.7% |
| 3374701 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.87 | 79.0 | 5.77e-01 | 96.1% | 70.6% |
| 3966248 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.86 | 74.0 | 6.34e-01 | 96.1% | 60.9% |
| 4026183 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.85 | 77.0 | 5.99e-01 | 96.1% | 72.7% |
| 5011232 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.84 | 72.0 | 7.09e-01 | 96.1% | 86.3% |
| 5056546 | 3349.1.1.3 ↗ | a+b two layers › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › PolC_DP2_cat | 0.83 | 74.0 | 4.44e-01 | 96.1% | 27.8% |
| 5030460 | 1.1.2.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat | 0.83 | 74.0 | 4.39e-01 | 96.1% | 26.9% |
| 5060748 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.82 | 73.0 | 6.39e-01 | 96.1% | 67.3% |
| 3409396 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.82 | 72.0 | 6.40e-01 | 96.1% | 68.6% |
| 5074983 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.81 | 71.0 | 6.71e-01 | 94.7% | 80.0% |
| 5045002 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.81 | 71.0 | 6.68e-01 | 96.1% | 80.0% |
| 3706161 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.81 | 68.0 | 6.57e-01 | 93.4% | 81.2% |
| 5053172 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.80 | 70.0 | 6.71e-01 | 96.1% | 84.7% |
| 4947745 | 1.1.2.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_2 | 0.80 | 71.0 | 6.67e-01 | 96.1% | 83.3% |
| 5055583 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.79 | 70.0 | 6.78e-01 | 96.1% | 85.9% |
| 4943103 | 1.1.2.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_2 | 0.79 | 70.0 | 6.77e-01 | 96.1% | 88.2% |
| 4927622 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.79 | 70.0 | 6.63e-01 | 96.1% | 83.3% |
| 5006472 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.79 | 69.0 | 6.82e-01 | 93.4% | 91.3% |
| 4354975 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.79 | 69.0 | 5.26e-01 | 93.4% | 45.6% |
| 5074694 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.79 | 69.0 | 5.53e-01 | 94.7% | 51.4% |
| 5077330 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.79 | 69.0 | 6.12e-01 | 94.7% | 68.6% |
| 3343851 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.78 | 69.0 | 4.85e-01 | 96.1% | 40.2% |
| 4977163 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.78 | 68.0 | 6.44e-01 | 96.1% | 80.7% |
| 4890084 | 1.1.2.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 | 0.78 | 70.0 | 5.84e-01 | 96.1% | 59.0% |
| 5060218 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.78 | 68.0 | 6.61e-01 | 96.1% | 88.2% |
| 3828556 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.78 | 67.0 | 5.41e-01 | 93.4% | 63.6% |
| 3602941 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.78 | 68.0 | 6.52e-01 | 96.1% | 84.7% |
| 4998501 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.78 | 69.0 | 6.62e-01 | 96.1% | 88.2% |
| 4200338 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.78 | 68.0 | 6.05e-01 | 94.7% | 83.8% |
| 5053173 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.77 | 67.0 | 6.23e-01 | 96.1% | 75.8% |
| 4983823 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.77 | 68.0 | 5.51e-01 | 96.1% | 73.2% |
| 5053174 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.76 | 66.0 | 6.27e-01 | 94.7% | 80.0% |
| 3740563 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.76 | 67.0 | 6.21e-01 | 96.1% | 81.1% |
| 4955491 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.76 | 67.0 | 5.49e-01 | 96.1% | 72.6% |
| 5005268 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.76 | 68.0 | 6.13e-01 | 96.1% | 86.0% |
| 3267813 | 1.1.2.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N | 0.75 | 66.0 | 6.34e-01 | 96.1% | 85.9% |
| 4953364 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 63.0 | 5.73e-01 | 90.8% | 86.0% |
| 3888404 | 1.1.2.38 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_PEX6 | 0.75 | 65.0 | 5.36e-01 | 96.1% | 74.8% |
| 3557903 | 1.1.2.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N | 0.75 | 65.0 | 6.02e-01 | 94.7% | 78.9% |
| 4890564 | 101.1.2.869 ↗ | alpha arrays › HTH › HTH › winged helix domain › IML1_N | 0.74 | 62.0 | 6.07e-01 | 94.7% | 85.2% |
| 3842541 | 1.1.2.38 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_PEX6 | 0.74 | 65.0 | 5.75e-01 | 97.4% | 86.4% |
| 3599535 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 65.0 | 6.15e-01 | 96.1% | 84.4% |
| 3625788 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 57.0 | 5.89e-01 | 84.2% | 88.6% |
| 3575767 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 64.0 | 5.60e-01 | 94.7% | 77.3% |
| 1005501 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.72 | 58.0 | 5.09e-01 | 86.8% | 80.4% |
| 3701559 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.72 | 62.0 | 5.37e-01 | 96.1% | 78.3% |
| 3772228 | 1.1.2.40 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PEX6_vert_N | 0.72 | 61.0 | 5.16e-01 | 94.7% | 65.4% |
| 4116299 | 1.1.2.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 | 0.72 | 63.0 | 5.86e-01 | 96.1% | 86.3% |
| 3824979 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.71 | 63.0 | 5.93e-01 | 96.1% | 81.1% |
| 3740728 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.71 | 60.0 | 5.83e-01 | 94.7% | 85.9% |
| 3930502 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.71 | 62.0 | 5.41e-01 | 94.7% | 85.5% |
| 4945778 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.71 | 59.0 | 5.18e-01 | 90.8% | 75.5% |
| 3587254 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.71 | 59.0 | 5.31e-01 | 92.1% | 86.7% |
| 3924865 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.71 | 61.0 | 5.23e-01 | 94.7% | 78.3% |
| 3511798 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.70 | 59.0 | 5.31e-01 | 93.4% | 88.6% |
| 3509026 | 1.1.1.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 | 0.70 | 61.0 | 4.69e-01 | 97.4% | 87.1% |
| 3933534 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.69 | 56.0 | 5.21e-01 | 88.2% | 87.4% |
| 3511796 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.68 | 58.0 | 5.07e-01 | 93.4% | 88.7% |
| 4492004 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.68 | 58.0 | 4.91e-01 | 94.7% | 68.0% |
| 3513377 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.67 | 57.0 | 5.12e-01 | 93.4% | 84.8% |
| 5031732 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.67 | 58.0 | 5.03e-01 | 94.7% | 77.4% |
| 3312578 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.67 | 57.0 | 4.76e-01 | 96.1% | 67.9% |
| 3587253 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.66 | 56.0 | 4.97e-01 | 93.4% | 89.1% |
| 2543743 | 1.1.1.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP | 0.66 | 55.0 | 4.93e-01 | 92.1% | 74.5% |
| 3381733 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.66 | 53.0 | 4.96e-01 | 88.2% | 71.6% |
| 5077747 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.65 | 56.0 | 4.74e-01 | 94.7% | 77.6% |
| 5009916 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.63 | 53.0 | 4.84e-01 | 96.1% | 83.8% |
| 3461051 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.59 | 49.0 | 4.26e-01 | 97.4% | 73.6% |
| 4605147 | 377.4.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like › RRG8 | 0.55 | 41.0 | 3.14e-01 | 81.6% | 38.5% |
| 3785746 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.52 | 38.0 | 2.92e-01 | 78.9% | 90.0% |
D4
medium
residues 343-402
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfA04 | 3.30.1490.180 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase ii | 0.89 | 82.0 | 8.10e-01 | 100.0% | 96.8% |
| 4c2mA04 | 3.30.1490.180 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase ii | 0.85 | 79.0 | 7.20e-01 | 100.0% | 97.4% |
| 4xttA00 | 3.30.70.1450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain | 0.69 | 59.0 | 5.22e-01 | 100.0% | 65.9% |
| 7agvB01 | 3.30.70.1450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain | 0.65 | 57.0 | 5.18e-01 | 100.0% | 72.8% |
| 1t8sA02 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.59 | 49.0 | 3.24e-01 | 100.0% | 24.8% |
| 5f9eA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 42.0 | 3.35e-01 | 100.0% | 38.1% |
| 1p8jA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 46.0 | 3.57e-01 | 100.0% | 96.2% |
| 1yn3A00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 43.0 | 3.76e-01 | 100.0% | 90.8% |
| 4a2aA02 | 3.30.1490.110 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.51 | 44.0 | 3.96e-01 | 100.0% | 80.5% |
| 6bwsB00 | 3.30.450.150 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain | 0.51 | 38.0 | 3.00e-01 | 83.3% | 54.0% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3500029 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.89 | 84.0 | 8.12e-01 | 100.0% | 92.3% |
| 3556111 | 275.1.1.1 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 | 0.89 | 83.0 | 8.09e-01 | 100.0% | 93.8% |
| 3660419 | 275.1.1.1 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 | 0.89 | 84.0 | 6.99e-01 | 100.0% | 67.4% |
| 4803227 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.89 | 81.0 | 8.14e-01 | 98.3% | 98.4% |
| 4948679 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.89 | 83.0 | 5.03e-01 | 100.0% | 19.3% |
| 4943460 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.88 | 83.0 | 5.64e-01 | 100.0% | 34.1% |
| 5054580 | 275.1.1.1 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 | 0.88 | 82.0 | 7.95e-01 | 100.0% | 95.4% |
| 3733629 | 4951.1.1.1 ↗ | alpha arrays › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_2 | 0.87 | 81.0 | 7.90e-01 | 100.0% | 93.8% |
| 5049545 | 275.1.1.1 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 | 0.87 | 77.0 | 7.77e-01 | 95.0% | 100.0% |
| 3655199 | 275.1.1.1 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 | 0.87 | 77.0 | 6.06e-01 | 95.0% | 54.8% |
| 3711495 | 4951.1.1.1 ↗ | alpha arrays › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_2 | 0.86 | 79.0 | 7.96e-01 | 100.0% | 98.3% |
| 4932732 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.86 | 73.0 | 7.57e-01 | 90.0% | 100.0% |
| 4015760 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.85 | 79.0 | 5.35e-01 | 100.0% | 38.5% |
| 3417262 | 275.1.1.1 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 | 0.85 | 79.0 | 7.24e-01 | 100.0% | 93.3% |
| 3600674 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.85 | 72.0 | 7.55e-01 | 93.3% | 100.0% |
| 3618553 | 275.1.1.1 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 | 0.84 | 78.0 | 7.17e-01 | 100.0% | 97.3% |
| 5040750 | 4261.1.1.0 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like | 0.75 | 59.0 | 6.15e-01 | 100.0% | 92.7% |
| 3974368 | 2003.1.1.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › TrkA_N | 0.74 | 61.0 | 4.16e-01 | 100.0% | 26.2% |
| 3388091 | 4261.1.1.1 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C | 0.72 | 59.0 | 5.48e-01 | 100.0% | 72.0% |
| 5038591 | 4261.1.1.0 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like | 0.71 | 59.0 | 5.51e-01 | 100.0% | 73.3% |
| 4054166 | 4261.1.1.1 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C | 0.70 | 62.0 | 5.63e-01 | 100.0% | 73.8% |
| 4963599 | 4261.1.1.1 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C | 0.70 | 57.0 | 5.18e-01 | 100.0% | 67.1% |
| 4976285 | 4261.1.1.1 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C | 0.69 | 59.0 | 5.48e-01 | 100.0% | 76.0% |
| 3623395 | 4261.1.1.2 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › BK_channel_a | 0.67 | 60.0 | 4.57e-01 | 100.0% | 47.1% |
| 3911472 | 4261.1.1.2 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › BK_channel_a | 0.67 | 60.0 | 4.85e-01 | 100.0% | 56.5% |
| 4949346 | 4261.1.1.1 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C | 0.67 | 55.0 | 4.93e-01 | 100.0% | 64.7% |
| 3587987 | 4261.1.1.1 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C | 0.66 | 58.0 | 5.14e-01 | 100.0% | 68.2% |
| 4141904 | 4261.1.1.1 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C | 0.66 | 58.0 | 5.10e-01 | 100.0% | 65.6% |
| 4956390 | 4261.1.1.0 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like | 0.66 | 54.0 | 4.85e-01 | 100.0% | 65.1% |
| 4939701 | 4261.1.1.1 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C | 0.66 | 56.0 | 5.08e-01 | 100.0% | 70.0% |
| 3837942 | 4261.1.1.1 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C | 0.65 | 57.0 | 4.84e-01 | 100.0% | 59.0% |
| 3914304 | 4261.1.1.0 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like | 0.64 | 57.0 | 5.76e-01 | 100.0% | 100.0% |
| 1937966 | 4261.1.1.2 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › BK_channel_a | 0.62 | 54.0 | 4.26e-01 | 100.0% | 46.8% |
| 3947552 | 4261.1.1.1 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C | 0.62 | 54.0 | 4.71e-01 | 100.0% | 64.2% |
| 4681298 | 304.24.1.16 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › PrmA | 0.62 | 50.0 | 4.33e-01 | 100.0% | 56.0% |
| 3717790 | 4261.1.1.2 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › BK_channel_a | 0.60 | 49.0 | 3.99e-01 | 100.0% | 46.7% |
| 3611052 | 4261.1.1.2 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › BK_channel_a | 0.60 | 49.0 | 3.98e-01 | 100.0% | 46.7% |
| 10198 | 2011.2.1.2 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1,AMNp_N | 0.59 | 49.0 | 3.02e-01 | 100.0% | 16.9% |
| 3879577 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.57 | 43.0 | 3.25e-01 | 81.7% | 60.7% |
| 4418041 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.57 | 47.0 | 3.12e-01 | 100.0% | 54.1% |
| 3743289 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.57 | 39.0 | 3.28e-01 | 81.7% | 41.0% |
| 3891050 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.56 | 42.0 | 3.31e-01 | 81.7% | 63.6% |
| 3594515 | 206.1.2.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase | 0.54 | 41.0 | 2.56e-01 | 85.0% | 38.6% |
| 3227940 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.52 | 40.0 | 2.68e-01 | 83.3% | 55.7% |
| 3727633 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.52 | 45.0 | 2.69e-01 | 100.0% | 14.8% |
| 4002587 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 43.0 | 4.13e-01 | 96.7% | 95.7% |