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DNA-directed_RNA_polymerase_subunit_RPB5

Euk-Vir

Brazilian_marseillevirus

DNA-directed_RNA_polymerase_subunit_RPB5__YP_009238979__Brazilian_marseillevirus__1813599

Identity

Accession:
YP_009238979 ↗
Protein ID:
DNA-directed_RNA_polymerase_subunit_RPB5
Kingdom:
euk

Quality

77.3 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Brazilian_marseillevirus

TaxID: 1813599

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-115
PDB
Domain cluster: rep: DNA-directed_RNA_polymerase_subunit_RPB5__YP_009310368__Golden_Marseillevirus__1720526__D1-112
D2 high residues 129-191
PDB
Domain cluster: rep: DNA-directed_RNA_polymerase_II_subunit_RPB5__YP_008052525__Phaeocystis_globosa_virus__251749__D146-209
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01191.25 best RNA_pol_Rpb5_C 53.1 3.00e-14 98.4% 84.9%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dzfA02 3.90.940.20 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.90 86.0 8.11e-01 100.0% 86.3%
5o60H02 3.10.430.100 Alpha Beta › Roll › Ribosomal Protein L9; domain 2 › Ribosomal protein L9, C-terminal domain 0.55 38.0 3.47e-01 73.0% 85.1%
3q6bA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 35.0 3.37e-01 96.8% 56.8%
7oodf01 3.10.430.100 Alpha Beta › Roll › Ribosomal Protein L9; domain 2 › Ribosomal protein L9, C-terminal domain 0.53 38.0 3.62e-01 76.2% 92.1%
4k3bA05 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.52 34.0 3.18e-01 96.8% 53.2%
3ethA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.52 33.0 3.37e-01 98.4% 66.1%
2vh2B01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.51 29.0 2.82e-01 100.0% 47.2%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4838977 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.92 87.0 8.06e-01 100.0% 82.9%
3824571 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.91 86.0 7.99e-01 100.0% 84.0%
3607644 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.90 84.0 7.92e-01 100.0% 85.1%
4253107 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.89 84.0 7.95e-01 100.0% 86.3%
4600910 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.88 82.0 7.92e-01 100.0% 90.0%
4861748 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.88 82.0 7.82e-01 100.0% 88.7%
3033324 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.87 80.0 7.66e-01 100.0% 87.5%
3596039 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.86 78.0 7.52e-01 96.8% 87.1%
3783660 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.61 40.0 3.47e-01 71.4% 42.0%
4026667 221.7.1.3 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL 0.60 43.0 3.71e-01 76.2% 89.0%
4973372 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.54 49.0 3.89e-01 100.0% 67.2%
3285597 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 45.0 2.69e-01 95.2% 36.2%
5060218 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.53 40.0 3.67e-01 100.0% 62.4%
3281177 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.50 39.0 2.99e-01 93.7% 44.9%