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DNA-directed_RNA_polymerase_subunit_RPO132

Euk-Vir

Anomala_cuprea_entomopoxvirus

DNA-directed_RNA_polymerase_subunit_RPO132__YP_009001558__Anomala_cuprea_entomopoxvirus__62099

Identity

Accession:
YP_009001558 ↗
Protein ID:
DNA-directed_RNA_polymerase_subunit_RPO132
Kingdom:
euk

Quality

65.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Alphaentomopoxvirus› Alphaentomopoxvirus_acuprea

TaxID: 62099

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-137_149-170
PDB
D2 high residues 800-903
PDB
Domain cluster: rep: putative_RNA_polymerase_beta_subunit__YP_009052296__Aureococcus_anophagefferens_virus__1474867__D765-873
D3 high residues 1088-1171
PDB
Domain cluster: rep: RNA_polymerase_RPO132__YP_008004199__Choristoneura_biennis_entomopoxvirus__10288__D1075-1173
D4 medium residues 180-359
PDB
Domain cluster: rep: DNA-directed_RNA_polymerase_subunit_beta__YP_009162498__Salmon_gill_poxvirus__1680908__D173-349
D5 medium residues 505-606
PDB
Domain cluster: rep: RNA_polymerase_RPO132__YP_008003891__Adoxophyes_honmai_entomopoxvirus_L__1293540__D506-600
D6 medium residues 608-744
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xgsA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 22.0 2.85e-01 99.3% 68.8%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4939952 4042.1.1.3 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_5 0.75 46.0 5.39e-01 78.8% 87.4%
2773893 4042.1.1.3 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_5 0.62 57.0 5.57e-01 97.1% 98.6%
3187714 4042.1.1.2 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6,RNA_pol_Rpb2_5 0.60 56.0 4.87e-01 98.5% 100.0%
5023522 4042.1.1.3 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_5 0.59 55.0 5.38e-01 97.1% 100.0%
1639174 4042.1.1.0 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase 0.58 53.0 4.73e-01 97.1% 99.5%
4861739 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.58 43.0 4.48e-01 77.4% 92.2%
3683411 4042.1.1.3 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_5 0.57 47.0 5.07e-01 97.1% 100.0%
3824945 4042.1.1.2 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6,RNA_pol_Rpb2_5 0.56 51.0 4.94e-01 97.1% 99.3%
5009210 4042.1.1.3 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_5 0.54 49.0 4.42e-01 95.6% 99.4%
4675029 4042.1.1.2 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6,RNA_pol_Rpb2_5 0.54 49.0 4.42e-01 95.6% 99.4%
5062682 4042.1.1.3 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_5 0.54 48.0 4.75e-01 95.6% 100.0%
4946075 4042.1.1.1 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6 0.54 49.0 4.90e-01 97.1% 100.0%
4932692 4042.1.1.3 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_5 0.53 49.0 4.87e-01 97.8% 100.0%
1513887 4042.1.1.0 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase 0.53 48.0 4.83e-01 98.5% 100.0%
5027956 4042.1.1.1 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6 0.53 47.0 4.74e-01 96.4% 98.6%
3335721 4042.1.1.2 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6,RNA_pol_Rpb2_5 0.52 48.0 4.55e-01 98.5% 100.0%
3596940 4042.1.1.0 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase 0.50 41.0 4.20e-01 87.6% 99.3%
D7 medium residues 768-799_905-967_1040-1076
PDB
Domain cluster: rep: RNA_polymerase_subunit_RPO132__YP_009046186__Penguinpox_virus__648998__D714-766_870-915_991-1015
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00562.34 best RNA_pol_Rpb2_6 42.1 8.60e-11 52.3% 16.9%