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DNA-directed_RNA_polymerase_subunit_alpha
Euk-VirLausannevirus
DNA-directed_RNA_polymerase_subunit_alpha__YP_004346983__Lausannevirus__999883
Identity
- Accession:
- YP_004346983 ↗
- Protein ID:
- DNA-directed_RNA_polymerase_subunit_alpha
- Kingdom:
- euk
Quality
74.2
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Losannavirus›
Lausannevirus
TaxID: 999883
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 87-217
Domain cluster:
rep: DNA-directed_RNA_polymerase_II_largest_subunit__YP_010084808__Shrimp_hemocyte_iridescent_virus__2039780__D81-188
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04997.18 best | RNA_pol_Rpb1_1 | 40.6 | 2.90e-10 | 91.6% | 35.9% |
D2
medium
residues 11-29_42-86_230-269
Domain cluster:
rep: pig_ID_3158_F95_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00084__D6-65_144-157
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04997.18 best | RNA_pol_Rpb1_1 | 56.2 | 5.20e-15 | 61.5% | 22.4% |
D3
medium
residues 352-491
Domain cluster:
rep: DNA-directed_RNA_polymerase_subunit_alpha__YP_009238536__Brazilian_marseillevirus__1813599__D353-470
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00623.26 best | RNA_pol_Rpb1_2 | 78.8 | 8.00e-22 | 96.4% | 80.1% |