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DNA-helicase-2

Euk-Vir

Diatraea_saccharalis_granulovirus

DNA-helicase-2__YP_009182280__Diatraea_saccharalis_granulovirus__1675862

Identity

Accession:: YP_009182280 ↗
Protein ID:: DNA-helicase-2
Kingdom:: euk

Quality

77.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Diatraea_saccharalis_granulovirus

TaxID: 1675862

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1022-1111

PDB

Domain cluster: rep: helicase__YP_009552640__Operophtera_brumata_nucleopolyhedrovirus__1046267__D1095-1177

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	62.9	1.80e-17	100.0%	8.0%

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4izzB03	1.10.10.1670	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain	0.64	50.0	4.67e-01	85.6%	99.1%
1zelA01	3.90.56.20	Alpha Beta › Alpha-Beta Complex › Phenol Hydroxylase P2 Protein › replication protein C, winged helix domain	0.63	44.0	4.32e-01	86.7%	66.3%
1dp7P00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.63	50.0	5.34e-01	94.4%	100.0%
1rrmA02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.61	44.0	3.45e-01	76.7%	92.5%
4c0aA02	1.10.1000.11	Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2	0.60	51.0	4.64e-01	92.2%	99.2%
1ng6A02	1.10.10.410	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.60	36.0	4.21e-01	73.3%	93.0%
3dv8A02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	41.0	4.33e-01	91.1%	87.2%
3go5A04	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.56	34.0	3.88e-01	92.2%	85.7%
5xbfA02	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.55	40.0	3.94e-01	93.3%	70.7%
2mh9A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	43.0	3.90e-01	87.8%	79.5%
1h6qA00	2.170.150.10	Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A	0.53	42.0	3.49e-01	86.7%	80.4%
1bjaA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	40.0	3.94e-01	92.2%	75.8%
4i8oA03	1.10.8.1130	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain	0.52	30.0	3.32e-01	75.6%	73.1%
6ldkA01	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.52	39.0	3.27e-01	83.3%	54.7%
7ec0P01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.52	40.0	3.18e-01	85.6%	45.9%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4560206	101.1.2.309 ↗	alpha arrays › HTH › HTH › winged helix domain › GPAT_C	0.69	55.0	5.55e-01	91.1%	85.6%
3394689	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.66	53.0	5.14e-01	88.9%	86.4%
4048642	101.1.1.304 ↗	alpha arrays › HTH › HTH › Three-helical HTH › GatB_Yqey	0.64	40.0	4.65e-01	76.7%	92.1%
3393116	101.1.2.74 ↗	alpha arrays › HTH › HTH › winged helix domain › Cnd2	0.62	51.0	4.76e-01	87.8%	88.2%
3916637	101.1.2.74 ↗	alpha arrays › HTH › HTH › winged helix domain › Cnd2	0.62	50.0	4.92e-01	86.7%	94.7%
3181638	109.4.1.1317 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps53_N, VPS53_C	0.60	47.0	2.85e-01	86.7%	19.3%
4093066	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.60	45.0	4.76e-01	81.1%	93.8%
3200783	109.4.1.2810 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps53_N, Vps54_N, VPS53_C	0.60	47.0	2.83e-01	86.7%	18.9%
3639372	109.4.1.2838 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps53_N, Sec6, VPS53_C	0.60	47.0	2.87e-01	86.7%	20.9%
4177832	621.1.1.2 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9	0.57	46.0	4.53e-01	88.9%	86.3%
3247860	2003.1.5.81 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25	0.55	45.0	3.24e-01	92.2%	37.9%
3938196	197.1.1.0 ↗	alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like	0.54	45.0	4.12e-01	93.3%	69.2%
3444977	109.4.1.233 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VPS53_C	0.53	41.0	2.94e-01	86.7%	34.9%
4018073	3651.1.1.0 ↗	alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain	0.53	44.0	4.09e-01	92.2%	80.9%
5077223	206.1.3.23 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase	0.52	41.0	2.74e-01	86.7%	53.8%
3648031	206.1.1.20 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr	0.51	39.0	2.84e-01	82.2%	44.2%

D2 medium residues 1-70_112-150

PDB

Domain cluster: rep: helicase__YP_004376283__Clostera_anachoreta_granulovirus__283675__D1-66_130-142

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	28.5	4.30e-07	66.1%	6.6%
PF04735.17	Baculo_helicase	27.8	7.20e-07	38.5%	2.9%

D3 medium residues 151-246

PDB

Domain cluster: rep: DNA_helicase__YP_009666413__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D195-285

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	36.0	2.40e-09	100.0%	8.6%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3otdA00	3.30.70.3000	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1)	0.56	45.0	3.36e-01	86.5%	86.7%
3zytA00	3.40.710.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily	0.53	45.0	3.13e-01	100.0%	92.5%
4b29A00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.51	40.0	3.23e-01	84.4%	62.6%
2i45D00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.50	34.0	3.42e-01	86.5%	67.7%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3728853	3767.1.1.0 ↗	a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain	0.55	42.0	3.62e-01	82.3%	88.1%
3737581	3767.1.1.0 ↗	a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain	0.54	43.0	3.56e-01	86.5%	90.9%
3762739	10.4.1.1 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB	0.52	34.0	3.23e-01	88.5%	52.5%
3241712	390.1.1.7 ↗	few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3	0.51	32.0	3.59e-01	72.9%	81.3%
4325944	3767.1.1.0 ↗	a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain	0.50	41.0	3.72e-01	88.5%	100.0%

D4 medium residues 269-385

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	75.9	2.10e-21	99.2%	7.7%

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2bbrA01	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.59	37.0	4.12e-01	94.9%	80.9%
3f2eA00	1.20.58.800	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	35.0	3.93e-01	82.1%	80.7%
3d7iB00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.58	34.0	3.67e-01	90.6%	67.3%
3ee4A00	1.10.620.20	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A	0.57	41.0	3.15e-01	76.9%	76.5%
1oj6A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.55	41.0	3.88e-01	78.6%	95.9%
3hyuA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.54	41.0	3.86e-01	78.6%	94.3%
6wk3A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.54	41.0	3.80e-01	78.6%	86.9%
2kbwA01	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.54	40.0	3.69e-01	92.3%	59.5%
2wy4A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.54	40.0	3.83e-01	78.6%	94.2%
1cg5B00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.53	40.0	3.78e-01	78.6%	93.6%
1x9fC00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.53	40.0	3.69e-01	78.6%	93.3%
1kn1B00	1.10.490.20	Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins	0.53	41.0	3.74e-01	83.8%	78.3%
2m6uA00	1.20.81.20	Mainly Alpha › Up-down Bundle › Receptor-associated Protein ›	0.52	32.0	3.81e-01	73.5%	89.0%
2i6hA02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.51	30.0	3.28e-01	88.0%	69.8%
3mvpA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.51	43.0	4.07e-01	96.6%	85.9%
5fzsA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.50	29.0	3.09e-01	88.0%	60.7%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3897765	5059.1.1.0 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter	0.68	32.0	3.05e-01	83.8%	37.1%
4974859	1075.1.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane	0.62	51.0	4.14e-01	91.5%	99.1%
5054742	3651.1.1.0 ↗	alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain	0.59	41.0	4.64e-01	96.6%	98.8%
4977086	1075.1.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane	0.59	52.0	4.21e-01	100.0%	65.1%
3213607	633.12.1.0 ↗	alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like	0.54	36.0	3.84e-01	78.6%	78.0%
4988788	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.54	46.0	4.02e-01	97.4%	100.0%
4945037	1075.1.2.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain	0.52	41.0	3.87e-01	85.5%	99.3%
3731836	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.50	35.0	2.98e-01	100.0%	41.0%

D5 medium residues 527-607

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	63.9	8.50e-18	100.0%	6.6%

CATH (49)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3bqoA00	1.25.40.210	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain	0.86	60.0	4.32e-01	81.5%	28.7%
1z0pA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.85	60.0	6.31e-01	72.8%	86.3%
4hz4A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.83	66.0	5.84e-01	84.0%	95.5%
4b6xA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.80	57.0	6.16e-01	75.3%	87.0%
2i9cA01	1.25.40.70	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK)	0.80	54.0	4.79e-01	71.6%	50.5%
2v5cA03	1.20.58.460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like	0.79	60.0	5.08e-01	85.2%	50.0%
1s3qG00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.78	58.0	4.51e-01	77.8%	67.5%
3nymA00	6.10.290.10	Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.78	55.0	4.74e-01	74.1%	62.9%
5jrcA00	1.20.58.2140	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.77	62.0	4.70e-01	86.4%	37.6%
4i1mB01	1.20.120.1700	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.77	57.0	4.84e-01	77.8%	48.8%
1nt2B02	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.77	54.0	5.84e-01	72.8%	91.0%
3tdvA02	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.77	52.0	3.75e-01	75.3%	27.2%
1wcrA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.76	58.0	5.35e-01	81.5%	80.6%
1ydxA02	1.10.287.1120	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein	0.75	59.0	5.69e-01	82.7%	86.7%
4fymF00	3.40.50.2020	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.75	52.0	3.70e-01	70.4%	33.0%
3txsC01	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.75	52.0	5.37e-01	71.6%	96.0%
2ic6A00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.75	53.0	5.65e-01	74.1%	93.0%
2fcwA00	1.20.81.10	Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain	0.75	57.0	5.19e-01	80.2%	63.2%
1nfvA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.74	59.0	4.56e-01	84.0%	42.6%
3unoE00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.74	58.0	4.50e-01	82.7%	41.9%
1a36A04	1.10.132.10	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 ›	0.74	53.0	4.09e-01	75.3%	39.4%
3ehfD01	1.20.5.1930	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.73	51.0	5.71e-01	72.8%	96.8%
3na7A00	1.10.287.1490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.73	61.0	4.36e-01	90.1%	53.2%
1gqeA01	1.20.58.410	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor	0.73	55.0	4.91e-01	80.2%	69.0%
2fupA00	1.20.58.300	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like	0.73	57.0	4.89e-01	84.0%	76.4%
1luwA01	1.10.287.990	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain	0.73	52.0	5.77e-01	75.3%	98.4%
1e52A00	4.10.860.10	Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain	0.72	48.0	5.66e-01	75.3%	100.0%
1zs3A00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.72	57.0	4.41e-01	85.2%	40.4%
2x0cA01	1.20.1420.10	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain	0.71	54.0	4.17e-01	80.2%	75.3%
7c1iA01	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.71	55.0	5.14e-01	81.5%	96.0%
2rdcA00	1.10.287.800	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242	0.70	57.0	4.81e-01	87.7%	83.5%
1fewA00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.69	56.0	4.37e-01	87.7%	69.4%
3l8rA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.69	54.0	4.98e-01	84.0%	79.4%
2ke4A00	6.10.140.470	Special › Helix non-globular › Helix Hairpins ›	0.68	50.0	4.74e-01	77.8%	66.3%
4u7iA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.68	52.0	4.98e-01	81.5%	75.3%
6tkvA01	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.68	49.0	5.26e-01	75.3%	95.6%
4k0dA00	1.20.120.1730	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.67	52.0	4.35e-01	85.2%	84.6%
3nrxA00	1.20.58.1520	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.66	53.0	4.68e-01	88.9%	74.0%
4e4eA01	1.10.287.990	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain	0.66	48.0	5.11e-01	77.8%	90.1%
4v1gA00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.66	46.0	4.61e-01	72.8%	94.1%
5tpmB00	1.20.120.530	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like	0.66	45.0	3.73e-01	71.6%	66.7%
1sr2A00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.66	47.0	4.09e-01	74.1%	71.6%
4ijjB00	1.20.120.910	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain	0.65	50.0	4.32e-01	82.7%	65.4%
3lssA01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.65	54.0	4.82e-01	88.9%	75.9%
2a0bA00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.64	47.0	4.13e-01	76.5%	81.4%
1kf6C00	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.63	55.0	4.76e-01	98.8%	64.6%
4u72A01	1.20.58.480	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.62	47.0	3.45e-01	80.2%	78.8%
4m7cB00	1.25.40.210	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain	0.61	50.0	3.70e-01	87.7%	97.0%
3l0iA01	1.20.120.1520	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.60	49.0	3.86e-01	90.1%	89.2%

ECOD (54)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4477580	5086.1.1.118 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › BBS2_hp	0.82	58.0	5.73e-01	72.8%	72.9%
3906819	192.17.1.6 ↗	alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › CC2D1A-B_DM14	0.81	57.0	4.59e-01	72.8%	40.0%
3232875	11.2.1.7 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › Anillin	0.81	58.0	4.13e-01	74.1%	28.2%
3738041	192.5.1.1 ↗	alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1	0.81	60.0	5.93e-01	76.5%	77.6%
4974450	3291.1.1.4 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30	0.81	59.0	4.47e-01	75.3%	67.4%
3489648	3291.1.1.1 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7	0.80	57.0	4.65e-01	74.1%	42.8%
3908626	3755.3.1.483 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF30493	0.80	59.0	4.05e-01	76.5%	25.9%
3296414	192.29.1.168 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF641	0.80	57.0	6.09e-01	74.1%	88.6%
3944931	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.79	59.0	5.69e-01	77.8%	76.7%
3840552	5086.1.1.90 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › V_ATPase_I	0.79	60.0	4.63e-01	79.0%	63.0%
3903422	3291.1.1.1 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7	0.79	58.0	5.01e-01	76.5%	54.2%
3186698	192.17.1.0 ↗	alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like	0.79	57.0	5.80e-01	75.3%	80.0%
5031890	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.79	60.0	4.17e-01	80.2%	27.8%
3692994	2004.1.1.73 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1	0.79	59.0	3.91e-01	79.0%	52.8%
3336677	605.1.1.132 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF641	0.78	57.0	5.98e-01	76.5%	86.7%
3719459	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.78	55.0	4.13e-01	72.8%	34.1%
3560750	192.17.1.0 ↗	alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like	0.78	55.0	5.91e-01	74.1%	88.6%
4489484	2002.1.1.30 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18	0.78	65.0	4.00e-01	88.9%	54.9%
3477749	192.1.1.0 ↗	alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain	0.78	54.0	5.82e-01	76.5%	84.3%
4936792	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.78	57.0	4.28e-01	76.5%	34.1%
3968763	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.77	54.0	5.48e-01	72.8%	73.8%
3484742	3922.1.1.197 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › BBS2_hp	0.77	57.0	5.64e-01	77.8%	76.5%
4942288	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.77	53.0	4.93e-01	71.6%	61.0%
4973840	4323.1.1.0 ↗	alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C	0.76	56.0	4.56e-01	76.5%	44.8%
3425296	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.76	57.0	4.79e-01	79.0%	48.9%
5024791	3291.1.1.1 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7	0.76	56.0	4.40e-01	76.5%	40.6%
3586028	1075.4.1.2 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane_2	0.76	62.0	4.40e-01	87.7%	58.3%
4945785	3291.1.1.1 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7	0.75	55.0	4.24e-01	76.5%	37.7%
5005597	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.75	56.0	4.64e-01	77.8%	74.8%
None	—		0.75	59.0	4.99e-01	84.0%	89.2%
4663913	5094.1.1.1 ↗	a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH	0.74	53.0	4.32e-01	75.3%	41.6%
4514051	192.7.1.2 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N	0.74	58.0	5.15e-01	84.0%	75.7%
4809272	3291.1.1.4 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30	0.74	53.0	4.67e-01	76.5%	59.5%
3781506	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.73	55.0	4.41e-01	79.0%	43.9%
1406322	109.4.1.2096 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, TPR_19, PF30363, PF30475	0.73	58.0	3.40e-01	84.0%	12.8%
3271459	4323.1.1.1 ↗	alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I	0.73	60.0	4.80e-01	86.4%	75.3%
3560590	3755.3.1.142 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › FAM186A-B_C	0.73	57.0	4.61e-01	82.7%	78.7%
3412574	3291.1.1.82 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › ING	0.73	53.0	4.54e-01	76.5%	50.0%
4988301	3877.1.1.0 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC	0.73	54.0	4.33e-01	77.8%	82.0%
4029165	2004.1.1.198 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23	0.72	63.0	3.94e-01	96.3%	42.4%
3965106	605.1.1.4 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3	0.71	50.0	5.21e-01	72.8%	81.3%
4568749	2004.1.1.585 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_21, AAA_23	0.70	59.0	3.89e-01	92.6%	47.4%
3246117	1075.4.1.2 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane_2	0.70	57.0	3.67e-01	87.7%	82.2%
3775375	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.67	57.0	4.68e-01	95.1%	99.3%
3564399	3755.3.1.282 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Tmemb_cc2	0.66	50.0	4.45e-01	80.2%	57.4%
3963355	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.65	47.0	4.89e-01	77.8%	86.7%
4985494	2004.1.1.198 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23	0.63	54.0	3.40e-01	97.5%	72.8%
3493683	3877.1.1.1 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP	0.62	47.0	3.41e-01	79.0%	59.6%
3578554	3877.1.1.0 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC	0.62	52.0	3.17e-01	92.6%	32.7%
3738395	3877.1.1.1 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP	0.59	45.0	3.36e-01	85.2%	83.0%
3513338	3877.1.1.0 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC	0.57	43.0	3.15e-01	80.2%	28.9%
3470615	3877.1.1.0 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC	0.56	43.0	3.21e-01	86.4%	80.8%
3616364	3877.1.1.1 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP	0.56	43.0	3.14e-01	84.0%	81.3%
3742038	3877.1.1.1 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP	0.53	42.0	3.13e-01	87.7%	64.4%

D6 medium residues 821-1021

PDB

Domain cluster: rep: SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00013__D158-375

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	296.7	4.80e-88	100.0%	15.5%