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DNA-helicase_1

Euk-Vir

Erinnyis_ello_granulovirus

DNA-helicase_1__YP_009091922__Erinnyis_ello_granulovirus__307444

Identity

Accession:: YP_009091922 ↗
Protein ID:: DNA-helicase_1
Kingdom:: euk

Quality

79.3 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Erinnyis_ello_granulovirus

TaxID: 307444

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 571-699

PDB

Domain cluster: rep: helicase__YP_008720025__Clostera_anastomosis_granulovirus_Henan__1986291__D625-732

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	57.2	9.20e-16	100.0%	12.7%

D2 high residues 994-1085

PDB

Domain cluster: rep: helicase__YP_009552640__Operophtera_brumata_nucleopolyhedrovirus__1046267__D1095-1177

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	77.7	6.10e-22	100.0%	8.2%

D3 medium residues 26-129

PDB

Domain cluster: rep: helicase__YP_006607831__Apocheima_cinerarium_nucleopolyhedrovirus__307461__D33-112

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	80.9	6.40e-23	100.0%	8.2%

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2yx1A01	3.30.70.2580	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.62	37.0	4.44e-01	82.7%	93.9%
1f08B00	3.40.1310.10	Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, ›	0.60	49.0	4.42e-01	90.4%	81.4%
5zneA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.58	39.0	4.41e-01	83.7%	98.6%
1i1gA02	3.30.70.920	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain	0.57	39.0	4.39e-01	83.7%	96.1%
1r6vA02	3.30.70.80	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9	0.56	39.0	4.31e-01	88.5%	96.2%
3dkxA01	3.40.1310.30	Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, ›	0.56	42.0	3.92e-01	80.8%	94.0%
2llzA01	3.30.70.2360	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.55	40.0	4.22e-01	76.0%	100.0%
2g0cA00	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.55	35.0	4.13e-01	79.8%	100.0%
3qfhA01	3.30.70.80	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9	0.54	34.0	4.00e-01	74.0%	100.0%
2l48A00	3.30.70.2030	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	36.0	3.91e-01	83.7%	85.9%
3n01A00	3.30.70.2470	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein-tyrosine phosphatase receptor IA-2 ectodomain	0.52	39.0	4.16e-01	78.8%	98.9%
2n8lA00	3.30.310.210	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein ›	0.52	39.0	3.31e-01	81.7%	79.1%
2fgcA03	3.30.70.1150	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2	0.51	34.0	3.77e-01	84.6%	90.8%
5uazA00	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.51	37.0	3.84e-01	76.0%	90.4%
1x60A01	3.30.70.1070	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat	0.51	34.0	3.91e-01	77.9%	100.0%
2asyA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	39.0	3.96e-01	84.6%	84.2%
4kr6A01	3.30.2130.30	Alpha Beta › 2-Layer Sandwich › VC0802-like ›	0.51	38.0	3.29e-01	79.8%	90.6%

ECOD (32)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4941615	304.128.1.0 ↗	a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB	0.63	38.0	4.60e-01	78.8%	96.9%
5011032	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.61	36.0	4.38e-01	77.9%	98.3%
4976636	304.24.1.5 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N	0.60	38.0	4.38e-01	81.7%	92.9%
2791434	304.55.1.10 ↗	a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PPV_E1_DBD	0.60	49.0	4.37e-01	90.4%	79.6%
4105204	304.24.1.3 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III	0.59	40.0	4.39e-01	80.8%	91.3%
5031902	304.24.1.5 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N	0.59	36.0	4.21e-01	81.7%	91.4%
5050501	3715.1.1.1 ↗	a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e	0.59	44.0	4.60e-01	80.8%	87.4%
5075549	304.24.1.5 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N	0.59	36.0	4.18e-01	81.7%	91.4%
3335490	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.58	38.0	4.35e-01	79.8%	98.6%
3838053	304.14.1.0 ↗	a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR)	0.57	36.0	4.21e-01	79.8%	100.0%
4992146	304.57.1.0 ↗	a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like	0.57	41.0	4.30e-01	75.0%	94.4%
5072282	304.8.1.0 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like	0.57	39.0	4.17e-01	82.7%	83.3%
3258036	321.1.1.2 ↗	a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C,Gln-synt_C-ter	0.56	45.0	2.87e-01	86.5%	55.6%
3782639	304.117.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC	0.56	40.0	3.95e-01	76.9%	88.7%
4979304	3715.1.1.1 ↗	a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e	0.55	41.0	4.25e-01	80.8%	83.8%
4452949	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.55	40.0	4.21e-01	85.6%	88.9%
3506125	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.54	40.0	3.91e-01	79.8%	87.5%
4965406	304.8.1.21 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9	0.54	37.0	4.07e-01	81.7%	93.8%
3358556	304.102.1.0 ↗	a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase	0.53	39.0	3.40e-01	77.9%	66.1%
4956901	304.8.1.21 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9	0.53	37.0	4.03e-01	83.7%	90.6%
3997340	4323.1.1.2 ↗	alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V-ATPase_C	0.52	40.0	3.05e-01	83.7%	39.3%
4940609	304.8.1.21 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9	0.52	36.0	3.87e-01	81.7%	88.2%
3784530	304.126.1.2 ↗	a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V-ATPase_C	0.52	41.0	3.07e-01	85.6%	35.2%
4414168	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.52	37.0	4.05e-01	83.7%	96.2%
3250514	304.126.1.2 ↗	a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V-ATPase_C	0.52	40.0	4.16e-01	83.7%	95.8%
2141397	304.9.1.11 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Nup35_RRM	0.51	37.0	3.85e-01	76.0%	90.4%
3726634	327.11.2.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I)	0.51	35.0	3.95e-01	72.1%	98.8%
157953	304.14.1.1 ↗	a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR	0.51	34.0	3.78e-01	70.2%	89.9%
3897640	304.9.1.18 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Tap-RNA_bind	0.51	36.0	3.82e-01	83.7%	86.7%
3614838	304.126.1.2 ↗	a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V-ATPase_C	0.50	38.0	3.93e-01	79.8%	96.8%
4050535	304.126.1.2 ↗	a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V-ATPase_C	0.50	39.0	3.68e-01	84.6%	79.2%
4473866	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.50	34.0	3.84e-01	85.6%	98.7%

D4 medium residues 130-218

PDB

Domain cluster: rep: DNA_helicase__YP_009666413__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D195-285

D5 medium residues 240-411

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	118.4	3.10e-34	87.2%	13.2%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4m70I00	1.20.5.4130	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.53	29.0	3.62e-01	92.4%	85.2%
8b70A01	1.20.1740.10	Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I	0.52	45.0	3.45e-01	95.3%	93.5%
4logB00	1.10.565.10	Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor	0.51	46.0	4.20e-01	100.0%	78.0%
3ihvA03	1.25.40.900	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.50	28.0	3.06e-01	70.9%	64.0%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3623733	102.1.2.27 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Tcp11	0.63	36.0	3.62e-01	97.7%	54.1%
3661763	5051.1.1.6 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans	0.56	49.0	3.70e-01	93.0%	89.3%
3591589	5050.1.1.28 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › BT1	0.56	33.0	3.20e-01	82.0%	49.0%
3528737	5051.1.1.6 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans	0.56	48.0	3.62e-01	93.0%	93.8%
5010966	1075.1.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain	0.55	45.0	3.98e-01	87.8%	86.9%
3171851	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.50	29.0	3.04e-01	79.7%	60.0%

D6 medium residues 493-522_700-759

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	61.6	4.50e-17	68.9%	4.7%

D7 medium residues 760-791_933-990

PDB

Domain cluster: rep: helicase-1__YP_006908593__Epinotia_aporema_granulovirus__166056__D761-777_917-967

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	76.5	1.40e-21	64.4%	4.4%
PF04735.17	Baculo_helicase	48.0	5.50e-13	36.7%	2.5%