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DNA-pol

Euk-Vir

Urbanus_proteus_nucleopolyhedrovirus

DNA-pol__YP_009357221__Urbanus_proteus_nucleopolyhedrovirus__1675866

Identity

Accession:: YP_009357221 ↗
Protein ID:: DNA-pol
Kingdom:: euk

Quality

80.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Urbanus_proteus_nucleopolyhedrovirus

TaxID: 1675866

Cluster

View cluster (158 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-81_117-187

PDB

Domain cluster: rep: DNA_polymerase__YP_009666761__Mythimna_unipuncta_nucleopolyhedrovirus__447897__D1-67_114-188

D2 medium residues 193-307

PDB

Domain cluster: rep: DNA_polymerase_elongation_subunit_family_B__YP_010088005__Lymphocystis_disease_virus_4__2704413__D159-241

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03104.26 best	DNA_pol_B_exo1	65.7	6.10e-18	99.1%	47.1%

D3 medium residues 500-575

PDB

Domain cluster: rep: DNA_polymerase__YP_009316112__Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus__268591__D473-499_523-556

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00136.27 best	DNA_pol_B	48.0	1.20e-12	93.4%	11.7%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3iayA06	6.10.140.1540	Special › Helix non-globular › Helix Hairpins ›	0.51	26.0	3.40e-01	90.8%	97.4%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3480546	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.79	57.0	3.87e-01	76.3%	33.6%
2723396	304.48.1.3 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B	0.73	52.0	5.16e-01	73.7%	96.2%
5017839	304.37.1.1 ↗	a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr	0.50	35.0	3.31e-01	92.1%	61.1%

D4 medium residues 576-658

PDB

Domain cluster: rep: dna_polymerase__YP_009186754__Sucra_jujuba_nucleopolyhedrovirus__1563660__D604-615_630-695

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00136.27 best	DNA_pol_B	36.4	4.00e-09	100.0%	18.1%

D5 medium residues 826-870

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3iayA07	1.10.132.60	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain	0.82	70.0	4.82e-01	100.0%	28.9%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3514097	4969.1.1.1 ↗	alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B	0.86	76.0	5.04e-01	100.0%	27.6%
3480544	4969.1.1.0 ↗	alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I	0.85	76.0	5.07e-01	100.0%	29.1%
3167790	4969.1.1.1 ↗	alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B	0.85	74.0	5.07e-01	100.0%	29.3%
4956225	4969.1.1.1 ↗	alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B	0.83	72.0	4.97e-01	100.0%	30.3%
5002819	4969.1.1.1 ↗	alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B	0.82	70.0	4.76e-01	100.0%	27.5%
3404727	4969.1.1.1 ↗	alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B	0.78	66.0	4.37e-01	100.0%	24.2%