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DNA-pol_protein

Euk-Vir

Thysanoplusia_orichalcea_nucleopolyhedrovirus

DNA-pol_protein__YP_007250472__Thysanoplusia_orichalcea_nucleopolyhedrovirus__101850

Identity

Accession:
YP_007250472 ↗
Protein ID:
DNA-pol_protein
Kingdom:
euk

Quality

84.4 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Thysanoplusia_orichalcea_nucleopolyhedrovirus

TaxID: 101850

Cluster

View cluster (158 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 191-407
PDB
Domain cluster: rep: DNA_polymerase__YP_009118564__Condylorrhiza_vestigialis_MNPV__1592576__D196-404
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF13482.13 best RNase_H_2 26.7 6.80e-06 98.6% 98.2%
PF10108.16 DNA_pol_B_exo2 30.6 3.80e-07 84.8% 65.6%
PF03104.26 DNA_pol_B_exo1 81.0 1.30e-22 77.4% 72.3%
D2 medium residues 21-186
PDB
Domain cluster: rep: DNA_polymerase__YP_009666761__Mythimna_unipuncta_nucleopolyhedrovirus__447897__D1-67_114-188
D3 medium residues 408-473_586-616
PDB
Domain cluster: rep: IMGVR_UViG_3300048031_000811-3300048031-Ga0494182_008429_2395_4416__D190-244_288-384
D4 medium residues 474-510_532-585
PDB
Domain cluster: rep: dna_polymerase__YP_009186754__Sucra_jujuba_nucleopolyhedrovirus__1563660__D507-527_545-577_616-629
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4o1pD02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 45.0 3.37e-01 94.5% 77.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079289 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.47e-01 95.6% 64.8%
D5 medium residues 511-531_617-741
PDB
Domain cluster: rep: NC_004735.1__NP_835679.1__Rm378p092__00092__D1-33_185-289
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00136.27 best DNA_pol_B 59.6 3.60e-16 88.4% 25.6%
D6 medium residues 742-803_881-940
PDB
Domain cluster: rep: dna-pol__YP_009666600__Oxyplax_ochracea_nucleopolyhedrovirus__2083176__D730-794_872-935
D7 medium residues 826-880
PDB
Domain cluster: rep: DNA-pol__YP_009357221__Urbanus_proteus_nucleopolyhedrovirus__1675866__D826-870