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DNA_binding_packing_protein

Euk-Vir

Anopheles_minimus_iridovirus

DNA_binding_packing_protein__YP_009021156__Anopheles_minimus_iridovirus__1465751

Identity

Accession:: YP_009021156 ↗
Protein ID:: DNA_binding_packing_protein
Kingdom:: euk

Quality

71.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Chloriridovirus› Chloriridovirus_anopheles1

TaxID: 1465751

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-154

PDB

Domain cluster: rep: hypothetical_protein_MIV079L__YP_654651__Invertebrate_iridescent_virus_3__345201__D16-99_114-149

D2 high residues 305-386

PDB

Domain cluster: rep: putative_transcription_factor_A2-like_protein__YP_004347315__Lausannevirus__999883__D263-338

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04947.20 best	Pox_VLTF3	72.0	6.80e-20	100.0%	44.0%

D3 medium residues 236-304

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04947.20 best	Pox_VLTF3	47.6	2.20e-12	100.0%	33.3%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1wh4A01	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.60	44.0	4.00e-01	78.3%	75.5%
2wmoA01	1.25.40.410	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DOCK DHR2 domain, lobe A	0.59	42.0	3.43e-01	76.8%	94.8%
3on3B00	3.40.920.10	Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III	0.59	49.0	3.76e-01	97.1%	91.4%
2oxlA00	1.20.5.5260	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.53	38.0	3.92e-01	94.2%	88.7%
2ms7A00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.53	44.0	3.95e-01	95.7%	75.5%
1t3dA01	1.10.3130.10	Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1	0.52	41.0	3.45e-01	94.2%	57.9%
1x4qA01	1.20.1390.10	Mainly Alpha › Up-down Bundle › PWI domain › PWI domain	0.52	38.0	3.77e-01	92.8%	76.1%
4hzdB01	1.10.3130.10	Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1	0.52	40.0	3.45e-01	94.2%	59.1%
4rg6A02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.51	35.0	3.43e-01	91.3%	64.9%
1ihgA02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.51	40.0	3.30e-01	91.3%	63.4%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3250472	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	40.0	2.92e-01	79.7%	49.7%
4960775	109.4.1.5 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1	0.54	40.0	2.84e-01	79.7%	37.6%
3368791	109.4.1.1257 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2	0.54	40.0	3.50e-01	79.7%	85.7%
3531170	109.4.1.1157 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_WDR11	0.53	39.0	2.59e-01	79.7%	91.1%
3680798	109.4.1.1269 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif	0.53	39.0	3.48e-01	79.7%	87.0%
4941783	110.1.1.0 ↗	alpha arrays › DEATH domain › DEATH domain › DEATH domain	0.53	44.0	4.07e-01	98.6%	85.3%
3458100	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.52	41.0	2.68e-01	87.0%	26.8%
3650870	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.52	37.0	3.00e-01	76.8%	67.6%
3825731	109.4.1.1272 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif	0.52	40.0	3.00e-01	82.6%	48.0%
3669124	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.52	40.0	2.67e-01	82.6%	29.7%
3705130	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	43.0	3.23e-01	100.0%	56.6%
3318084	109.4.1.1269 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif	0.52	38.0	2.61e-01	92.8%	20.1%
3665199	109.4.1.1988 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_11, TPR_19	0.50	38.0	3.34e-01	81.2%	77.1%