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DNA_binding_protein
Euk-VirChimpanzee_adenovirus_Y25
DNA_binding_protein__YP_006272965__Chimpanzee_adenovirus_Y25__1123958
Identity
- Accession:
- YP_006272965 ↗
- Protein ID:
- DNA_binding_protein
- Kingdom:
- euk
Quality
76.6
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Mastadenovirus›
Chimpanzee_adenovirus_Y25
TaxID: 1123958
Cluster
View cluster (53 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 248-270_319-491
Domain cluster:
rep: DBP__YP_009162599__Skunk_adenovirus_PB1__1641642__D183-206_246-418
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03728.19 best | Viral_DNA_Zn_bi | 87.9 | 7.80e-25 | 50.0% | 96.9% |
| PF03728.19 | Viral_DNA_Zn_bi | 27.6 | 4.80e-06 | 30.6% | 41.8% |
D2
medium
residues 156-213
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02236.24 best | Viral_DNA_bi | 55.6 | 8.30e-15 | 93.1% | 63.3% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wb0X01 | 1.10.269.10 | Mainly Alpha › Orthogonal Bundle › Adenovirus Single-stranded Dna-binding Protein, domain 1 › Adenovirus DNA-binding, N-terminal domain | 0.97 | 91.0 | 6.94e-01 | 98.3% | 48.7% |
| 1gjsA00 | 1.10.8.40 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain | 0.65 | 48.0 | 4.68e-01 | 81.0% | 80.0% |
| 2lqgA00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.62 | 48.0 | 3.71e-01 | 86.2% | 69.6% |
| 5cqgA03 | 1.10.10.2210 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.62 | 45.0 | 4.08e-01 | 77.6% | 69.6% |
| 2yfqB01 | 1.10.8.1210 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.59 | 42.0 | 4.45e-01 | 75.9% | 84.6% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.57 | 41.0 | 3.92e-01 | 81.0% | 91.7% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.54 | 42.0 | 3.37e-01 | 86.2% | 66.9% |
| 2damA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.51 | 40.0 | 3.86e-01 | 91.4% | 77.6% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1118996 | 510.1.1.1 ↗ | alpha bundles › Domain of early E2A DNA-binding protein, ADDBP › Domain of early E2A DNA-binding protein, ADDBP › Domain of early E2A DNA-binding protein, ADDBP › Viral_DNA_bi | 0.95 | 90.0 | 7.54e-01 | 100.0% | 64.4% |
| 4038003 | 632.2.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA-like | 0.67 | 54.0 | 5.04e-01 | 89.7% | 77.3% |
| 1544881 | 632.2.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA-like | 0.64 | 47.0 | 4.83e-01 | 81.0% | 91.1% |
| 3996596 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.62 | 50.0 | 4.74e-01 | 91.4% | 100.0% |