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DNA_binding_protein

Euk-Vir

Epinotia_aporema_granulovirus

DNA_binding_protein__YP_006908583__Epinotia_aporema_granulovirus__166056

Identity

Accession:
YP_006908583 ↗
Protein ID:
DNA_binding_protein
Kingdom:
euk

Quality

82.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Epinotia_aporema_granulovirus

TaxID: 166056

Cluster

View cluster (35 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-56_115-135_172-249_269-279
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04786.19 best Baculo_DNA_bind 67.7 1.50e-18 55.0% 30.8%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zjyC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 29.0 4.04e-01 94.7% 90.5%
6hxiA01 3.30.470.110 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.55 32.0 2.99e-01 98.7% 42.7%
5teqA01 3.30.470.110 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.53 33.0 2.90e-01 99.3% 41.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017092 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.60 26.0 3.89e-01 89.4% 95.4%
3244962 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 27.0 3.54e-01 90.1% 90.7%
3307519 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.53 27.0 3.62e-01 96.0% 100.0%
3393085 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 25.0 3.50e-01 86.1% 96.0%
D2 medium residues 57-114_136-171_250-268
PDB
Domain cluster: rep: DBP__YP_003429390__Artogeia_rapae_granulovirus__362830__D66-100_139-170_249-268
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.67 33.0 4.29e-01 85.0% 84.1%
3pgbA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 41.0 4.08e-01 100.0% 69.0%
3shsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 32.0 3.53e-01 73.5% 68.5%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 33.0 3.19e-01 86.7% 51.2%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 30.0 3.09e-01 99.1% 54.1%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 36.0 3.25e-01 88.5% 49.4%
6a5gA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 35.0 3.28e-01 86.7% 53.7%
3gm8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 33.0 3.44e-01 87.6% 66.7%
3shsA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 32.0 3.49e-01 77.0% 75.0%
4fqpA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 31.0 3.39e-01 91.2% 70.7%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 32.0 3.05e-01 86.7% 51.9%
2mnjB00 2.60.40.4160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 34.0 3.76e-01 94.7% 85.2%
5kkuD00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.51 43.0 3.30e-01 94.7% 84.5%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 28.0 3.31e-01 99.1% 76.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3641705 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.67 33.0 3.48e-01 92.9% 50.5%
4126991 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 34.0 3.83e-01 96.5% 65.6%
4031907 222.1.1.28 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27762 0.61 31.0 3.15e-01 92.0% 46.4%
4941020 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 31.0 3.58e-01 72.6% 68.8%
3927175 922.1.1.1 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.59 25.0 3.62e-01 85.0% 93.3%
5070424 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 36.0 3.72e-01 89.4% 63.6%
4024473 243.3.1.20 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 0.56 37.0 3.71e-01 85.8% 64.2%
5073182 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 33.0 3.36e-01 98.2% 59.3%
3396136 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.55 28.0 3.56e-01 70.8% 92.7%
5044443 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 35.0 3.68e-01 73.5% 70.0%
361002 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.55 33.0 3.19e-01 86.7% 51.6%
2443846 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 35.0 3.10e-01 86.7% 45.9%
3833642 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.54 30.0 3.07e-01 90.3% 53.5%
2443845 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.53 33.0 3.05e-01 86.7% 47.0%
3597758 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.52 43.0 3.08e-01 88.5% 77.1%
3519733 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.52 25.0 2.68e-01 85.0% 51.6%
3278704 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.51 28.0 3.22e-01 91.2% 71.2%
3843944 243.5.1.7 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AKAP28 0.51 41.0 3.95e-01 86.7% 76.0%
4206503 304.109.1.4 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.51 38.0 3.75e-01 90.3% 74.2%
3860562 11.1.1.84 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SLAM 0.51 33.0 2.84e-01 95.6% 38.5%
4096139 304.109.1.4 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.51 37.0 4.01e-01 78.8% 92.6%
4296415 304.109.1.4 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.50 37.0 3.95e-01 80.5% 89.0%