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DNA_binding_protein

Euk-Vir

Deer_mastadenovirus_B

DNA_binding_protein__YP_009373249__Deer_mastadenovirus_B__2170000

Identity

Accession:: YP_009373249 ↗
Protein ID:: DNA_binding_protein
Kingdom:: euk

Quality

79.9 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› Deer_mastadenovirus_B

TaxID: 2170000

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 99-196

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_009109584__Simian_adenovirus_DM-2014__1560346__D107-191_400-428

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02236.24 best	Viral_DNA_bi	105.4	2.30e-30	84.7%	96.2%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wb0X01	1.10.269.10	Mainly Alpha › Orthogonal Bundle › Adenovirus Single-stranded Dna-binding Protein, domain 1 › Adenovirus DNA-binding, N-terminal domain	0.89	80.0	7.48e-01	93.9%	99.1%
3keyA01	1.10.10.1080	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain	0.56	43.0	4.53e-01	81.6%	95.4%
3cwzB01	1.20.58.900	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain	0.56	40.0	3.59e-01	76.5%	85.6%
3h4cA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.54	35.0	3.60e-01	91.8%	67.7%
2yevA02	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.54	29.0	3.25e-01	81.6%	67.6%
7lb8B01	1.10.3470.10	Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC	0.52	43.0	3.04e-01	89.8%	99.7%
1chuA03	1.20.58.100	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain	0.52	36.0	3.84e-01	91.8%	80.7%
2crbA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.51	34.0	3.49e-01	92.9%	70.1%
4pklA00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.50	39.0	3.76e-01	83.7%	97.3%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1118996	510.1.1.1 ↗	alpha bundles › Domain of early E2A DNA-binding protein, ADDBP › Domain of early E2A DNA-binding protein, ADDBP › Domain of early E2A DNA-binding protein, ADDBP › Viral_DNA_bi	0.92	79.0	8.24e-01	88.8%	97.8%
3712208	2484.8.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD)	0.63	46.0	3.30e-01	76.5%	42.1%
3816842	109.4.1.498 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4487	0.58	46.0	2.80e-01	84.7%	42.5%
3344640	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	42.0	3.56e-01	79.6%	70.6%
3261926	193.1.1.1 ↗	alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH	0.55	40.0	3.50e-01	77.6%	68.4%
3271530	4310.1.1.1 ↗	alpha arrays › Dcp2 box A domain › Dcp2 box A domain › Dcp2 box A domain › DCP2	0.54	41.0	4.27e-01	82.7%	87.8%
4114241	4952.1.1.0 ↗	alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like	0.54	34.0	3.45e-01	70.4%	63.0%
4959335	601.48.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain	0.53	40.0	4.14e-01	88.8%	83.2%
3361553	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.52	37.0	3.92e-01	92.9%	84.7%
3218555	5054.1.1.0 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels	0.51	38.0	3.33e-01	86.7%	51.3%
3173897	130.1.1.46 ↗	alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PF30540	0.51	35.0	3.29e-01	71.4%	72.0%

D2 medium residues 305-447

PDB

Domain cluster: rep: DNA-binding_protein__YP_007985656__Fowl_aviadenovirus_5__172861__D340-418_440-494

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03728.19 best	Viral_DNA_Zn_bi	79.9	2.40e-22	67.8%	98.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1117516	375.7.1.1 ↗	few secondary structure elements › Rubredoxin-like › Zn-binding domains of ADDBP › Zn-binding domains of ADDBP › Viral_DNA_Zn_bi	0.92	75.0	8.15e-01	99.3%	98.4%