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DNA_binding_protein
Euk-VirNeodiprion_abietis_NPV
DNA_binding_protein__YP_667854__Neodiprion_abietis_NPV__204507
Identity
- Accession:
- YP_667854 ↗
- Protein ID:
- DNA_binding_protein
- Kingdom:
- euk
Quality
71.6
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Gammabaculovirus›
Neodiprion_abietis_nucleopolyhedrovirus
TaxID: 204507
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 62-235
Domain cluster:
rep: ssDNA_binding_protein__YP_009118586__Condylorrhiza_vestigialis_MNPV__1592576__D101-219_236-303
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04786.19 best | Baculo_DNA_bind | 58.7 | 8.40e-16 | 100.0% | 74.5% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 37.0 | 4.67e-01 | 95.4% | 95.1% |
| 3gw6A03 | 3.30.2460.10 | Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain | 0.61 | 17.0 | 2.89e-01 | 86.8% | 68.4% |
| 2vw9B00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 37.0 | 4.59e-01 | 98.9% | 100.0% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 35.0 | 4.27e-01 | 92.0% | 91.0% |
| 3gqhA02 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.56 | 14.0 | 2.86e-01 | 93.1% | 87.5% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3616890 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.61 | 38.0 | 4.61e-01 | 93.7% | 93.9% |
| 4137219 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.61 | 36.0 | 4.53e-01 | 98.9% | 100.0% |
| 4044404 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.60 | 37.0 | 4.60e-01 | 89.7% | 100.0% |
| 3995685 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.59 | 36.0 | 4.45e-01 | 96.6% | 97.2% |
| 3587268 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 40.0 | 4.70e-01 | 99.4% | 100.0% |
| 4952914 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 21.0 | 3.39e-01 | 71.8% | 89.8% |
| 3471077 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 40.0 | 4.11e-01 | 97.1% | 72.9% |
| 4088621 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.56 | 26.0 | 3.32e-01 | 94.8% | 73.3% |
| 4227163 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.55 | 25.0 | 3.24e-01 | 94.3% | 73.0% |
| 3563069 | 1086.1.1.5 ↗ | beta meanders › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › EMI | 0.52 | 13.0 | 2.54e-01 | 93.1% | 66.7% |
| 4375028 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.50 | 24.0 | 2.71e-01 | 82.2% | 56.0% |
| 5081944 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.50 | 25.0 | 2.80e-01 | 84.5% | 57.8% |
D2
medium
residues 1-61