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DNA_helicase

Euk-Vir

Choristoneura_rosaceana_nucleopolyhedrovirus

DNA_helicase__YP_008378412__Choristoneura_rosaceana_nucleopolyhedrovirus__58094

Identity

Accession:: YP_008378412 ↗
Protein ID:: DNA_helicase
Kingdom:: euk

Quality

76.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Choristoneura_rosaceana_nucleopolyhedrovirus

TaxID: 58094

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1118-1221

PDB

Domain cluster: rep: helicase__YP_009552640__Operophtera_brumata_nucleopolyhedrovirus__1046267__D1095-1177

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	107.8	5.10e-31	100.0%	8.0%

D2 medium residues 1-62_93-207

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	142.5	1.60e-41	64.4%	9.1%
PF04735.17	Baculo_helicase	38.9	3.00e-10	34.5%	4.4%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1z1bA01	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.62	17.0	2.95e-01	75.7%	70.2%
4iajA00	3.30.1490.390	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649	0.56	26.0	3.69e-01	84.7%	97.4%
1w8kA02	3.50.4.10	Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor	0.51	28.0	3.45e-01	89.3%	85.5%
1bhuA00	2.60.20.30	Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 ›	0.50	29.0	3.64e-01	83.6%	97.1%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3608399	862.1.1.7 ↗	a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PPL5	0.66	57.0	5.23e-01	94.4%	98.3%
3596656	862.1.1.0 ↗	a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain	0.64	57.0	4.90e-01	96.0%	100.0%
3319614	390.1.1.0 ↗	few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like	0.62	26.0	3.62e-01	94.4%	78.8%
3662417	390.1.1.0 ↗	few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like	0.59	26.0	3.34e-01	93.8%	69.0%
2756948	862.1.1.1 ↗	a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S	0.59	43.0	4.33e-01	75.7%	85.2%

D3 medium residues 208-299

PDB

Domain cluster: rep: DNA_helicase__YP_009666413__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D195-285

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	72.0	3.10e-20	100.0%	6.7%

D4 medium residues 330-484

PDB

Domain cluster: rep: helicase_1__YP_009011148__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D300-447

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	91.3	4.90e-26	98.7%	12.2%

D5 medium residues 485-545

PDB

Domain cluster: rep: helicase__YP_009118538__Condylorrhiza_vestigialis_MNPV__1592576__D481-541

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	52.9	1.80e-14	100.0%	4.4%

D6 medium residues 710-819

PDB

Domain cluster: rep: helicase__YP_009666576__Oxyplax_ochracea_nucleopolyhedrovirus__2083176__D694-791

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	81.8	3.40e-23	99.1%	8.5%

D7 medium residues 911-1117

PDB

Domain cluster: rep: SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00013__D158-375

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	314.4	2.10e-93	100.0%	16.0%