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DNA_helicase

Euk-Vir

Spodoptera_littoralis_nucleopolyhedrovirus

DNA_helicase__YP_009505890__Spodoptera_littoralis_nucleopolyhedrovirus__10456

Identity

Accession:: YP_009505890 ↗
Protein ID:: DNA_helicase
Kingdom:: euk

Quality

74.3 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Spodoptera_littoralis_nucleopolyhedrovirus

TaxID: 10456

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 231-319

PDB

D2 high residues 361-528

PDB

Domain cluster: rep: helicase_1__YP_009011148__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D300-447

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	81.9	3.30e-23	100.0%	14.8%

D3 high residues 1157-1244

PDB

Domain cluster: rep: helicase__YP_009552640__Operophtera_brumata_nucleopolyhedrovirus__1046267__D1095-1177

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1dp7P00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.64	52.0	5.51e-01	92.0%	100.0%
4izzB03	1.10.10.1670	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain	0.63	48.0	4.50e-01	84.1%	99.1%
3mq0A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.58	40.0	4.20e-01	86.4%	80.5%
1h6qA00	2.170.150.10	Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A	0.56	43.0	3.53e-01	84.1%	79.8%
2iruA02	3.30.70.3300	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.55	37.0	3.27e-01	70.5%	67.4%
1irxA05	1.10.10.350	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.54	42.0	4.17e-01	88.6%	78.5%
4v19K02	1.10.10.250	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain	0.52	38.0	4.00e-01	76.1%	98.7%
2mh9A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	41.0	3.65e-01	86.4%	79.5%
4ad9A02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	41.0	4.16e-01	87.5%	91.7%
1qduB00	3.30.70.1470	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Caspase-like	0.51	35.0	3.56e-01	86.4%	72.7%
4f0zB00	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.51	34.0	2.88e-01	77.3%	39.4%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3638956	101.1.2.309 ↗	alpha arrays › HTH › HTH › winged helix domain › GPAT_C	0.68	55.0	4.66e-01	89.8%	96.0%
3698543	101.1.2.309 ↗	alpha arrays › HTH › HTH › winged helix domain › GPAT_C	0.68	55.0	5.20e-01	88.6%	84.8%
3899864	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.68	54.0	5.13e-01	87.5%	81.0%
4973290	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.67	50.0	5.47e-01	86.4%	100.0%
3394692	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.66	54.0	5.11e-01	88.6%	81.9%
3713916	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.66	52.0	5.01e-01	85.2%	85.0%
3498779	101.1.2.34 ↗	alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding	0.66	54.0	5.50e-01	89.8%	98.8%
5029778	101.1.2.43 ↗	alpha arrays › HTH › HTH › winged helix domain › Pox_D5	0.65	58.0	5.83e-01	98.9%	98.9%
5022021	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.64	58.0	5.30e-01	98.9%	78.3%
3883278	101.1.2.34 ↗	alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding	0.64	56.0	5.51e-01	96.6%	95.8%
3537242	101.1.2.34 ↗	alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding	0.64	53.0	5.14e-01	90.9%	83.0%
3382543	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.57	46.0	4.59e-01	88.6%	87.8%
3902183	2003.1.2.18 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain	0.53	42.0	2.78e-01	87.5%	19.3%
3198213	108.1.1.109 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7, EF-hand_8	0.53	36.0	3.11e-01	71.6%	45.5%
4929662	2003.1.5.81 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25	0.53	42.0	3.29e-01	88.6%	51.5%
3606924	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.52	39.0	3.17e-01	89.8%	40.8%

D4 medium residues 1-64

PDB

D5 medium residues 133-229

PDB

Domain cluster: rep: helicase__YP_006607831__Apocheima_cinerarium_nucleopolyhedrovirus__307461__D33-112

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	71.2	5.50e-20	100.0%	8.2%

D6 medium residues 626-725_866-881

PDB

Domain cluster: rep: P143__YP_009116998__Pseudoplusia_includens_SNPV_IE__1592335__D559-634_819-841

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	42.8	2.10e-11	98.3%	7.9%

D7 medium residues 726-834

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4fp4A00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.53	42.0	3.35e-01	88.1%	78.2%
6vynC01	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.52	31.0	3.64e-01	76.1%	86.5%
3owaA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.51	36.0	3.41e-01	73.4%	58.0%
1td6A01	1.20.1480.10	Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1	0.51	34.0	3.48e-01	77.1%	70.6%
2yksA02	1.20.58.390	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain	0.51	36.0	3.52e-01	72.5%	89.7%
6fmhB01	1.10.3160.10	Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1	0.50	44.0	3.81e-01	98.2%	94.2%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3970127	150.1.2.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase	0.56	40.0	3.36e-01	75.2%	58.5%
4266371	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.56	37.0	3.22e-01	77.1%	43.6%
3928069	109.4.1.917 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TT21_N	0.53	43.0	4.08e-01	89.9%	80.7%
4974404	7014.1.1.1 ↗	alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA	0.51	35.0	3.45e-01	77.1%	64.2%
4638344	3755.3.1.299 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF445	0.50	33.0	2.39e-01	75.2%	21.5%

D8 medium residues 991-1009_1028-1058

PDB