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DNA_ligase
Euk-VirMicromonas_pusilla_virus_12T
DNA_ligase__YP_007676235__Micromonas_pusilla_virus_12T__755272
Identity
- Accession:
- YP_007676235 ↗
- Protein ID:
- DNA_ligase
- Kingdom:
- euk
Quality
84.7
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Algavirales›
Phycodnaviridae›
Prasinovirus›
Micromonas_pusilla_virus_12T
TaxID: 755272
Cluster
View cluster (52 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-71
Domain cluster:
rep: MT701595.1__QPB09739.1__CPT_Shaeky_052__00052__D4-80
CATH (76)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wewA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.73 | 50.0 | 3.47e-01 | 71.4% | 51.5% |
| 1njkA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.72 | 56.0 | 4.54e-01 | 84.3% | 98.5% |
| 2cyeC00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.72 | 53.0 | 4.34e-01 | 80.0% | 90.9% |
| 4rmmA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.71 | 50.0 | 4.09e-01 | 75.7% | 72.6% |
| 4k00A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.69 | 52.0 | 4.21e-01 | 81.4% | 94.2% |
| 1bh3A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.69 | 47.0 | 3.12e-01 | 71.4% | 18.0% |
| 2gvhB02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.69 | 50.0 | 4.23e-01 | 77.1% | 95.7% |
| 5byuA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.69 | 51.0 | 4.22e-01 | 80.0% | 92.2% |
| 3q90B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.69 | 47.0 | 3.82e-01 | 71.4% | 38.5% |
| 3ir3A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.68 | 50.0 | 4.16e-01 | 78.6% | 90.5% |
| 2oiwA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.68 | 50.0 | 4.11e-01 | 80.0% | 92.5% |
| 3qooA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.67 | 49.0 | 3.95e-01 | 77.1% | 79.1% |
| 2dslA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.67 | 48.0 | 4.15e-01 | 77.1% | 84.3% |
| 2hx5A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.67 | 51.0 | 4.14e-01 | 84.3% | 93.7% |
| 3r87A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.67 | 52.0 | 4.28e-01 | 85.7% | 95.5% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.67 | 44.0 | 4.68e-01 | 72.9% | 78.3% |
| 3hm0A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.67 | 48.0 | 4.01e-01 | 77.1% | 97.6% |
| 4w78F00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.67 | 50.0 | 4.14e-01 | 81.4% | 93.7% |
| 2egjA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.66 | 49.0 | 4.13e-01 | 81.4% | 99.2% |
| 4rljB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.65 | 47.0 | 3.74e-01 | 77.1% | 86.4% |
| 2hljA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.65 | 48.0 | 3.92e-01 | 80.0% | 92.0% |
| 4ae8D00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.65 | 47.0 | 3.61e-01 | 77.1% | 60.0% |
| 1ni9A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.65 | 45.0 | 3.46e-01 | 71.4% | 37.1% |
| 2fujA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.65 | 47.0 | 3.97e-01 | 77.1% | 96.6% |
| 1c8uA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.65 | 46.0 | 3.65e-01 | 77.1% | 68.6% |
| 2qwzA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.65 | 44.0 | 3.68e-01 | 72.9% | 83.5% |
| 4ae7A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.64 | 47.0 | 3.49e-01 | 78.6% | 53.8% |
| 4blqA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 41.0 | 2.81e-01 | 87.1% | 17.2% |
| 2gf6A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.64 | 48.0 | 3.96e-01 | 81.4% | 94.7% |
| 1ixlA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.64 | 47.0 | 3.88e-01 | 78.6% | 75.2% |
| 3e1eC00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.64 | 47.0 | 3.77e-01 | 78.6% | 73.8% |
| 1zkiA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.64 | 46.0 | 3.85e-01 | 77.1% | 80.0% |
| 4ybvA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.64 | 46.0 | 3.88e-01 | 77.1% | 84.3% |
| 3lw3B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.63 | 46.0 | 3.71e-01 | 77.1% | 69.3% |
| 3kuvB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.63 | 46.0 | 3.73e-01 | 77.1% | 84.2% |
| 3f1tB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.63 | 45.0 | 3.71e-01 | 77.1% | 76.5% |
| 1wchA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.62 | 41.0 | 2.69e-01 | 72.9% | 15.3% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 43.0 | 4.31e-01 | 88.6% | 71.8% |
| 3e29B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.62 | 47.0 | 3.84e-01 | 82.9% | 76.1% |
| 3ia8A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.62 | 52.0 | 4.13e-01 | 100.0% | 84.0% |
| 5dstA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.62 | 45.0 | 3.38e-01 | 78.6% | 80.8% |
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.61 | 41.0 | 2.84e-01 | 70.0% | 20.8% |
| 3d6xB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.61 | 46.0 | 3.67e-01 | 81.4% | 77.9% |
| 1z6bA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 44.0 | 3.49e-01 | 77.1% | 76.1% |
| 6r3wA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.60 | 52.0 | 4.05e-01 | 100.0% | 87.0% |
| 4bs9A05 | 3.30.160.660 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 51.0 | 4.33e-01 | 94.3% | 62.3% |
| 3r0qA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.60 | 41.0 | 3.00e-01 | 72.9% | 63.5% |
| 2k4vA00 | 3.30.160.370 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 | 0.59 | 52.0 | 4.36e-01 | 100.0% | 63.2% |
| 2hboA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 45.0 | 3.69e-01 | 82.9% | 76.7% |
| 3qcmA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.59 | 38.0 | 2.58e-01 | 72.9% | 16.1% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 46.0 | 3.90e-01 | 98.6% | 49.2% |
| 2jmuA01 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.59 | 51.0 | 3.57e-01 | 94.3% | 75.6% |
| 1gyvA00 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.59 | 49.0 | 4.21e-01 | 97.1% | 91.7% |
| 5c0pA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.59 | 51.0 | 3.43e-01 | 100.0% | 27.8% |
| 4iedA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.58 | 51.0 | 3.54e-01 | 100.0% | 28.9% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.58 | 50.0 | 4.84e-01 | 98.6% | 84.8% |
| 3k67A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 43.0 | 3.39e-01 | 81.4% | 75.6% |
| 3uoaB02 | 2.60.40.3360 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 49.0 | 4.02e-01 | 97.1% | 84.6% |
| 7vd7A01 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.57 | 40.0 | 3.70e-01 | 81.4% | 56.5% |
| 2ia7A00 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 40.0 | 3.38e-01 | 72.9% | 50.5% |
| 3hxlA05 | 3.30.360.90 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › | 0.57 | 39.0 | 3.92e-01 | 71.4% | 78.3% |
| 1nrfA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 49.0 | 3.41e-01 | 100.0% | 61.0% |
| 3cjyA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.54 | 46.0 | 3.25e-01 | 100.0% | 73.1% |
| 1kv3A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 42.0 | 3.59e-01 | 84.3% | 94.0% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 40.0 | 4.16e-01 | 100.0% | 88.9% |
| 6n8pA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 48.0 | 3.02e-01 | 100.0% | 30.2% |
| 3tqmA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.53 | 44.0 | 4.09e-01 | 100.0% | 73.3% |
| 2bzlA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 47.0 | 3.16e-01 | 100.0% | 60.2% |
| 1xkzC00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 44.0 | 3.15e-01 | 100.0% | 28.2% |
| 4dy0B02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.52 | 43.0 | 3.57e-01 | 91.4% | 96.1% |
| 3f6gA01 | 3.30.160.740 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 40.0 | 4.24e-01 | 95.7% | 100.0% |
| 4o8sA01 | 3.10.450.620 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain | 0.52 | 36.0 | 3.05e-01 | 72.9% | 40.8% |
| 4oddA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 43.0 | 3.54e-01 | 100.0% | 86.6% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 38.0 | 3.89e-01 | 97.1% | 84.8% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 41.0 | 4.13e-01 | 100.0% | 90.5% |
| 1yguA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.50 | 43.0 | 2.93e-01 | 98.6% | 66.7% |
ECOD (82)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3788193 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.79 | 53.0 | 4.07e-01 | 70.0% | 32.9% |
| 5029226 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.78 | 53.0 | 5.85e-01 | 70.0% | 94.5% |
| 3930831 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.76 | 56.0 | 3.67e-01 | 100.0% | 18.6% |
| 5050697 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.76 | 51.0 | 5.91e-01 | 70.0% | 100.0% |
| 3248518 | 243.1.1.12 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 | 0.76 | 52.0 | 4.29e-01 | 71.4% | 43.1% |
| 5079755 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.75 | 52.0 | 5.72e-01 | 71.4% | 94.5% |
| 3508100 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.75 | 58.0 | 4.51e-01 | 82.9% | 40.7% |
| 5014272 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.73 | 59.0 | 5.91e-01 | 87.1% | 85.7% |
| 3730441 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.73 | 52.0 | 3.23e-01 | 74.3% | 43.4% |
| 3436093 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.72 | 50.0 | 4.89e-01 | 85.7% | 66.7% |
| 4629131 | 9.29.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK | 0.72 | 54.0 | 4.52e-01 | 81.4% | 47.2% |
| 3266046 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.71 | 49.0 | 5.20e-01 | 71.4% | 85.0% |
| 1406251 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.71 | 50.0 | 4.09e-01 | 75.7% | 72.4% |
| 3618439 | 222.1.1.10 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 | 0.70 | 48.0 | 4.27e-01 | 71.4% | 88.0% |
| 5079500 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.70 | 53.0 | 3.91e-01 | 81.4% | 50.0% |
| 3519287 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.69 | 48.0 | 3.99e-01 | 71.4% | 80.8% |
| 3197622 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.69 | 62.0 | 5.45e-01 | 100.0% | 81.0% |
| 4013646 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.69 | 52.0 | 4.14e-01 | 80.0% | 91.4% |
| 4560456 | 4998.1.1.1 ↗ | beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 | 0.68 | 61.0 | 4.85e-01 | 100.0% | 73.6% |
| 4344304 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.68 | 47.0 | 3.70e-01 | 72.9% | 74.0% |
| 4930099 | 222.1.1.8 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 | 0.68 | 51.0 | 4.13e-01 | 80.0% | 92.6% |
| 3496242 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 46.0 | 5.29e-01 | 71.4% | 100.0% |
| 4985149 | 222.1.1.8 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 | 0.68 | 51.0 | 4.14e-01 | 81.4% | 96.3% |
| 3706467 | 222.1.1.10 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 | 0.68 | 45.0 | 3.95e-01 | 70.0% | 86.4% |
| 4044601 | 9.13.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 | 0.67 | 45.0 | 3.70e-01 | 70.0% | 38.3% |
| 149002 | 222.1.1.8 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 | 0.67 | 52.0 | 4.28e-01 | 85.7% | 95.5% |
| 3388794 | 71.2.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like | 0.67 | 59.0 | 4.02e-01 | 97.1% | 52.5% |
| 5026243 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.67 | 53.0 | 3.54e-01 | 88.6% | 41.4% |
| 3413325 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.67 | 59.0 | 3.72e-01 | 100.0% | 22.9% |
| 388139 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.67 | 45.0 | 3.65e-01 | 71.4% | 67.4% |
| 4995224 | 222.1.1.21 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FlK | 0.66 | 48.0 | 4.05e-01 | 77.1% | 88.3% |
| 4033686 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.66 | 48.0 | 3.99e-01 | 77.1% | 80.0% |
| 4268461 | 274.1.1.5 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor | 0.66 | 42.0 | 4.03e-01 | 70.0% | 54.1% |
| 5044451 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 46.0 | 4.48e-01 | 75.7% | 66.3% |
| 3801624 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.65 | 47.0 | 4.21e-01 | 87.1% | 54.0% |
| 3526118 | 11.1.1.810 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FGF-BP1 | 0.65 | 57.0 | 5.04e-01 | 100.0% | 66.7% |
| 3961612 | 881.1.1.8 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C | 0.65 | 50.0 | 3.50e-01 | 94.3% | 27.9% |
| 6062 | 222.1.1.8 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 | 0.64 | 48.0 | 3.95e-01 | 81.4% | 94.0% |
| 5067760 | 283.1.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase | 0.64 | 42.0 | 3.94e-01 | 72.9% | 53.3% |
| 2882170 | 2003.1.5.151 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 | 0.63 | 47.0 | 3.30e-01 | 82.9% | 35.6% |
| 4083689 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.62 | 43.0 | 3.68e-01 | 71.4% | 47.7% |
| 4021392 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.62 | 54.0 | 3.53e-01 | 100.0% | 24.7% |
| 3965735 | 274.1.1.5 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor | 0.61 | 41.0 | 3.92e-01 | 71.4% | 57.6% |
| 4963369 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.61 | 54.0 | 4.11e-01 | 100.0% | 89.4% |
| 3583959 | 220.1.1.23 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ICAP-1_inte_bdg | 0.61 | 55.0 | 4.34e-01 | 100.0% | 77.1% |
| 5043104 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.61 | 52.0 | 4.31e-01 | 100.0% | 68.9% |
| 3679001 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.60 | 53.0 | 3.98e-01 | 100.0% | 39.1% |
| 4984054 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.60 | 51.0 | 3.70e-01 | 100.0% | 39.6% |
| 5018204 | 7520.1.1.0 ↗ | a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like | 0.60 | 52.0 | 4.01e-01 | 100.0% | 86.7% |
| 2466957 | 222.1.1.22 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › ApeP-like | 0.60 | 41.0 | 3.24e-01 | 71.4% | 74.3% |
| 4977196 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.60 | 47.0 | 3.24e-01 | 87.1% | 37.6% |
| 184719 | 3514.1.1.1 ↗ | a+b two layers › uncharacterized protein PA1076 › uncharacterized protein PA1076 › uncharacterized protein PA1076 › DUF5064 | 0.59 | 52.0 | 4.36e-01 | 100.0% | 63.2% |
| 3599881 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.59 | 50.0 | 3.91e-01 | 94.3% | 44.1% |
| 3370313 | 220.1.1.78 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 | 0.59 | 48.0 | 3.66e-01 | 90.0% | 50.3% |
| 3938060 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.58 | 40.0 | 3.05e-01 | 71.4% | 29.1% |
| 5071621 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.58 | 45.0 | 3.17e-01 | 87.1% | 36.0% |
| 222972 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.58 | 50.0 | 4.64e-01 | 98.6% | 75.3% |
| 3502237 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.58 | 39.0 | 2.61e-01 | 72.9% | 15.6% |
| 3472467 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.58 | 48.0 | 4.75e-01 | 91.4% | 92.0% |
| 6089 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.58 | 45.0 | 3.63e-01 | 87.1% | 73.9% |
| 3879303 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.57 | 44.0 | 4.28e-01 | 88.6% | 82.5% |
| 4950394 | 3414.1.1.13 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 | 0.56 | 39.0 | 3.48e-01 | 72.9% | 54.3% |
| 3618840 | 9.1.1.48 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 | 0.56 | 47.0 | 3.48e-01 | 100.0% | 67.1% |
| 5001211 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.55 | 46.0 | 3.37e-01 | 100.0% | 40.0% |
| 4937410 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.55 | 46.0 | 4.18e-01 | 94.3% | 89.5% |
| 4040973 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.55 | 43.0 | 4.40e-01 | 98.6% | 90.0% |
| 5023443 | 330.4.1.0 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain | 0.55 | 44.0 | 4.53e-01 | 100.0% | 95.4% |
| 3933857 | 9.1.1.48 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 | 0.55 | 45.0 | 3.39e-01 | 100.0% | 66.7% |
| 4611568 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.54 | 45.0 | 4.44e-01 | 100.0% | 88.0% |
| 5024241 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.54 | 45.0 | 4.21e-01 | 100.0% | 76.8% |
| 4318843 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.54 | 44.0 | 3.54e-01 | 92.9% | 64.8% |
| 4135153 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.54 | 44.0 | 4.33e-01 | 98.6% | 86.7% |
| 4216680 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.53 | 48.0 | 4.35e-01 | 100.0% | 81.7% |
| 4038269 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.53 | 39.0 | 4.06e-01 | 100.0% | 87.7% |
| 3194095 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.52 | 47.0 | 4.25e-01 | 100.0% | 87.4% |
| 5061259 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.52 | 44.0 | 4.03e-01 | 98.6% | 88.0% |
| 3390537 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.52 | 45.0 | 2.91e-01 | 100.0% | 22.1% |
| 4438684 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.52 | 45.0 | 4.29e-01 | 100.0% | 84.5% |
| 4932637 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.51 | 44.0 | 4.08e-01 | 100.0% | 97.8% |
| 4872853 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.51 | 42.0 | 3.84e-01 | 100.0% | 67.6% |
| 4968392 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.51 | 44.0 | 3.93e-01 | 100.0% | 74.0% |
| 4984581 | 283.1.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase | 0.50 | 37.0 | 2.81e-01 | 92.9% | 33.3% |
D2
high
residues 78-244
Domain cluster:
rep: Salt_Pond_R1_B_H2O_MG_scaffold_1_prodigal-single.1__X__X__00295__D161-347
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01068.27 best | DNA_ligase_A_M | 50.1 | 4.10e-13 | 100.0% | 92.7% |
D3
high
residues 247-327
Domain cluster:
rep: MK256384.1__QBA85097.1__X__00002__D37-130
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14743.13 best | DNA_ligase_OB_2 | 39.7 | 5.60e-10 | 86.4% | 80.3% |