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DNA_ligase
Euk-VirAgrotis_segetum_granulovirus
DNA_ligase__YP_009513154__Agrotis_segetum_granulovirus__10464
Identity
- Accession:
- YP_009513154 ↗
- Protein ID:
- DNA_ligase
- Kingdom:
- euk
Quality
75.7
mean pLDDT
Taxonomy
TaxID: 10464
Cluster
View cluster (36 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-199
Domain cluster:
rep: DNA_ligase__YP_009329768__BeAn_58058_virus__67082__D5-155
D2
high
residues 220-388
Domain cluster:
rep: Salt_Pond_R1_B_H2O_MG_scaffold_1_prodigal-single.1__X__X__00295__D161-347
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09414.16 best | RNA_ligase | 41.6 | 2.00e-10 | 91.7% | 98.8% |
| PF01068.27 | DNA_ligase_A_M | 67.0 | 2.60e-18 | 55.6% | 45.1% |
| PF01068.27 | DNA_ligase_A_M | 46.4 | 5.60e-12 | 46.8% | 39.2% |
D3
high
residues 392-557
Domain cluster:
rep: DNA_ligase_-2-__YP_010377156__Monkeypox_virus__10244__D413-557
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3w1gA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.80 | 67.0 | 7.20e-01 | 89.8% | 100.0% |
| 6nhxA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.79 | 55.0 | 6.51e-01 | 86.7% | 100.0% |
| 3l2pA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.79 | 56.0 | 6.57e-01 | 90.4% | 100.0% |
| 2cfmA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.79 | 61.0 | 6.71e-01 | 92.8% | 95.0% |
| 6p0cA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 66.0 | 7.07e-01 | 90.4% | 100.0% |
| 2hivA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 67.0 | 6.96e-01 | 92.8% | 98.7% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.57 | 27.0 | 3.85e-01 | 81.3% | 100.0% |
| 3j7aV00 | 2.40.50.1000 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 32.0 | 3.45e-01 | 82.5% | 63.7% |
| 4qclA01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 30.0 | 4.00e-01 | 80.1% | 100.0% |
| 2vl6A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 33.0 | 3.98e-01 | 78.3% | 89.3% |
| 5aj3Q00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 31.0 | 3.71e-01 | 79.5% | 84.4% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 32.0 | 3.87e-01 | 80.7% | 96.1% |
| 3m4pA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 33.0 | 3.93e-01 | 80.7% | 93.8% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3253468 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.80 | 71.0 | 7.09e-01 | 91.6% | 98.2% |
| 3730279 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.80 | 71.0 | 7.03e-01 | 92.8% | 91.4% |
| 3789669 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 71.0 | 7.31e-01 | 93.4% | 95.6% |
| 3626186 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.80 | 70.0 | 7.07e-01 | 91.0% | 90.9% |
| 4275073 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.79 | 71.0 | 7.33e-01 | 92.8% | 99.4% |
| 1199553 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.79 | 65.0 | 7.05e-01 | 86.7% | 100.0% |
| 3598978 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.78 | 69.0 | 7.02e-01 | 93.4% | 95.0% |
| 4973625 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.77 | 59.0 | 6.62e-01 | 90.4% | 99.2% |
| 4291923 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.77 | 65.0 | 6.86e-01 | 89.8% | 96.7% |
| 4670455 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.77 | 61.0 | 6.68e-01 | 94.0% | 97.1% |
| 3393802 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.77 | 68.0 | 6.92e-01 | 92.8% | 93.3% |
| 4945407 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.77 | 67.0 | 7.04e-01 | 91.6% | 100.0% |
| 4947308 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.76 | 64.0 | 6.91e-01 | 89.2% | 100.0% |
| 3968581 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.76 | 56.0 | 6.42e-01 | 95.8% | 100.0% |
| 4350108 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.76 | 67.0 | 6.83e-01 | 93.4% | 94.4% |
| 3397967 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.76 | 68.0 | 7.09e-01 | 97.0% | 100.0% |
| 4022745 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.75 | 67.0 | 6.64e-01 | 92.2% | 94.1% |
| 3343074 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.75 | 65.0 | 6.87e-01 | 97.6% | 100.0% |
| 3808461 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.74 | 69.0 | 7.02e-01 | 97.6% | 100.0% |
| 3382836 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.74 | 66.0 | 6.83e-01 | 92.8% | 99.4% |
| 3711546 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 65.0 | 6.18e-01 | 93.4% | 84.2% |
| 3201221 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.60 | 30.0 | 3.70e-01 | 78.9% | 75.2% |
| 4807965 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.58 | 29.0 | 3.72e-01 | 79.5% | 81.6% |
| 5030363 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.57 | 33.0 | 4.01e-01 | 80.1% | 86.4% |
| 3399810 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.56 | 29.0 | 3.81e-01 | 78.9% | 91.1% |
| 4047115 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.54 | 33.0 | 4.11e-01 | 78.9% | 100.0% |
| 3690510 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.54 | 34.0 | 4.04e-01 | 80.7% | 94.5% |
| 4029582 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.54 | 33.0 | 3.92e-01 | 79.5% | 88.7% |
| 5000768 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.53 | 32.0 | 3.78e-01 | 80.7% | 87.0% |
| 3448049 | 2.1.1.229 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 | 0.53 | 33.0 | 3.98e-01 | 80.7% | 97.1% |
| 3375524 | 2.1.1.229 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 | 0.52 | 32.0 | 3.68e-01 | 80.7% | 83.3% |
| 4170378 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.52 | 33.0 | 3.86e-01 | 78.9% | 90.4% |
| 4137219 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.52 | 32.0 | 3.92e-01 | 80.7% | 99.0% |
| 3814285 | 2.1.1.229 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 | 0.51 | 33.0 | 3.93e-01 | 81.3% | 97.3% |
| 4680392 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.51 | 32.0 | 3.80e-01 | 80.7% | 93.6% |
| 3839607 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.50 | 32.0 | 3.76e-01 | 80.7% | 89.8% |
| 3924081 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.50 | 33.0 | 3.53e-01 | 80.7% | 77.1% |