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DNA_ligase

Euk-Vir

African_swine_fever_virus

DNA_ligase__YP_009702347__African_swine_fever_virus__10497

Identity

Accession:
YP_009702347 ↗
Protein ID:
DNA_ligase
Kingdom:
euk

Quality

86.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Asfuvirales› Asfarviridae› Asfivirus› African_swine_fever_virus

TaxID: 10497

Cluster

View cluster (52 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-117
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bqgA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.66 39.0 3.71e-01 79.3% 49.3%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.60 34.0 3.65e-01 71.6% 62.7%
4wrnA03 2.60.40.4100 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain 0.60 49.0 4.33e-01 89.7% 94.3%
1u5uA00 2.40.180.10 Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain 0.58 51.0 3.62e-01 99.1% 67.2%
1sil000 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 50.0 3.52e-01 97.4% 52.8%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.44e-01 72.4% 96.5%
4qqsB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 47.0 3.45e-01 100.0% 81.2%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 46.0 3.44e-01 99.1% 86.3%
3og6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.84e-01 82.8% 86.9%
5n9bA01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.51 39.0 3.70e-01 80.2% 94.9%
2eddA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.85e-01 76.7% 79.5%
4ffuB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 38.0 3.49e-01 79.3% 94.7%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 37.0 3.47e-01 75.9% 87.8%
1w15A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 41.0 3.99e-01 88.8% 91.7%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944943 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.68 53.0 5.86e-01 88.8% 100.0%
3856363 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.67 46.0 3.98e-01 70.7% 99.4%
3940510 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.65 40.0 4.69e-01 82.8% 90.0%
3507332 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.63 39.0 3.65e-01 82.8% 50.7%
3927497 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.61 38.0 4.39e-01 82.8% 90.0%
3704401 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 41.0 4.19e-01 95.7% 76.5%
3172864 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.56 44.0 3.51e-01 82.8% 85.7%
3272413 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.56 44.0 4.25e-01 92.2% 72.6%
5072933 4200.1.1.0 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like 0.56 47.0 3.72e-01 93.1% 79.6%
3584167 220.1.1.123 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.56 41.0 4.02e-01 77.6% 81.5%
3595257 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.56 51.0 3.71e-01 100.0% 89.4%
4444775 63.1.1.5 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › ATG27 0.56 43.0 3.98e-01 82.8% 77.8%
2527953 5.1.2.10 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF1861 0.56 50.0 3.67e-01 100.0% 98.7%
5038627 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.54 49.0 3.55e-01 99.1% 90.8%
3924286 243.1.1.40 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 0.54 46.0 3.82e-01 93.1% 97.1%
3433806 5.1.2.29 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF1668 0.54 47.0 3.78e-01 94.0% 100.0%
3593551 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 31.0 3.33e-01 82.8% 63.0%
3636389 213.1.1.18 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › HAT_KAT11 0.54 44.0 3.01e-01 87.1% 94.5%
3505113 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 42.0 4.37e-01 83.6% 95.4%
3622961 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.54 39.0 4.19e-01 75.0% 99.0%
3766606 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 44.0 4.11e-01 88.8% 89.0%
5032625 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 35.0 3.85e-01 80.2% 82.1%
3183304 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.53 47.0 4.42e-01 100.0% 93.8%
4288599 5090.1.1.7 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › HAP2-GCS1 0.53 47.0 3.28e-01 97.4% 99.2%
3505900 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 38.0 4.01e-01 75.9% 98.1%
3513020 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.81e-01 72.4% 85.5%
3694872 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 47.0 3.19e-01 99.1% 40.6%
4020255 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.52 46.0 3.69e-01 97.4% 98.3%
3612452 243.1.1.86 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_MEX67 0.52 43.0 3.43e-01 93.1% 99.6%
3581386 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 35.0 3.91e-01 81.0% 91.1%
3618629 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 43.0 3.97e-01 93.1% 82.7%
5036970 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 38.0 3.80e-01 79.3% 83.3%
3683638 7026.1.1.13 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Hobbit 0.50 35.0 2.91e-01 70.7% 62.9%
D2 high residues 129-317
PDB
Domain cluster: rep: Salt_Pond_R1_B_H2O_MG_scaffold_1_prodigal-single.1__X__X__00295__D161-347
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01068.27 best DNA_ligase_A_M 117.9 6.90e-34 100.0% 93.6%
D3 high residues 321-417
PDB
Domain cluster: rep: MK256384.1__QBA85097.1__X__00002__D37-130