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DNA_packaging_protein_UL32
Euk-VirMacacine_alphaherpesvirus_1
DNA_packaging_protein_UL32__NP_851892__Macacine_alphaherpesvirus_1__10325
Identity
- Accession:
- NP_851892 ↗
- Protein ID:
- DNA_packaging_protein_UL32
- Kingdom:
- euk
Quality
83.4
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Simplexvirus›
Macacine_alphaherpesvirus_1
TaxID: 10325
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 43-59_102-217_233-258
Domain cluster:
rep: DNA_cleavage_packaging_protein__YP_009207093__Hawaiian_green_turtle_herpesvirus__70564__D1-103_380-397
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01673.24 best | Herpes_env | 222.1 | 2.30e-65 | 89.3% | 27.2% |
D2
medium
residues 274-322_404-421_532-590
Domain cluster:
rep: DNA_packaging_protein_UL32__YP_009046530__Falconid_herpesvirus_1__1510155__D226-251_307-343_606-663
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01673.24 best | Herpes_env | 89.8 | 2.80e-25 | 47.6% | 11.3% |
| PF01673.24 | Herpes_env | 40.7 | 2.20e-10 | 38.1% | 8.3% |
D3
medium
residues 323-403
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01673.24 best | Herpes_env | 62.0 | 7.50e-17 | 98.8% | 14.5% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pkfA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.68 | 56.0 | 3.55e-01 | 90.1% | 26.8% |
| 5l92A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.65 | 53.0 | 3.44e-01 | 90.1% | 23.3% |
| 2o8pA00 | 1.20.190.20 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain | 0.64 | 50.0 | 3.64e-01 | 84.0% | 42.9% |
| 8fbcA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.61 | 51.0 | 3.29e-01 | 91.4% | 22.0% |
| 4iggB02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.60 | 46.0 | 4.11e-01 | 84.0% | 78.5% |
| 1y6xA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.59 | 36.0 | 3.50e-01 | 81.5% | 55.2% |
| 3mgxB00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 48.0 | 3.13e-01 | 91.4% | 49.6% |
| 4z5qA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 48.0 | 3.15e-01 | 90.1% | 22.6% |
| 4hz4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 41.0 | 3.71e-01 | 74.1% | 57.1% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 43.0 | 3.79e-01 | 79.0% | 77.5% |
| 3nv6A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.57 | 45.0 | 2.97e-01 | 90.1% | 21.3% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.57 | 42.0 | 3.93e-01 | 79.0% | 72.8% |
| 2xgjA03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.57 | 47.0 | 3.45e-01 | 90.1% | 34.9% |
| 3craB01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.57 | 36.0 | 3.62e-01 | 79.0% | 60.5% |
| 4ri6A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 39.0 | 3.48e-01 | 72.8% | 73.1% |
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 42.0 | 3.75e-01 | 79.0% | 63.7% |
| 1hr7C02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 47.0 | 3.50e-01 | 97.5% | 53.8% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.54 | 31.0 | 3.74e-01 | 72.8% | 88.5% |
| 8b9zK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 36.0 | 3.54e-01 | 84.0% | 61.5% |
| 7nc3F01 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 40.0 | 3.65e-01 | 82.7% | 66.7% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.53 | 41.0 | 3.45e-01 | 82.7% | 84.4% |
| 4zi3D00 | 1.20.1520.10 | Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain | 0.51 | 42.0 | 3.66e-01 | 91.4% | 66.4% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 38.0 | 3.43e-01 | 80.2% | 59.8% |
| 3amiA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 41.0 | 3.17e-01 | 90.1% | 69.8% |
| 1ygpA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.51 | 42.0 | 2.83e-01 | 93.8% | 92.7% |
| 1n5uA05 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.50 | 41.0 | 3.71e-01 | 90.1% | 88.4% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3723852 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.63 | 49.0 | 4.12e-01 | 82.7% | 83.7% |
| 3361821 | 397.5.1.2 ↗ | few secondary structure elements › Toxic hairpin › Antimicrobial peptide EcAMP1 › Antimicrobial peptide EcAMP1 › EXS | 0.63 | 50.0 | 3.92e-01 | 88.9% | 45.9% |
| 3502309 | 109.4.1.163 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SYMPK_PTA1_N | 0.62 | 50.0 | 3.39e-01 | 90.1% | 55.0% |
| 3218644 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.62 | 46.0 | 4.04e-01 | 79.0% | 67.5% |
| 2072360 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.60 | 46.0 | 3.40e-01 | 80.2% | 40.8% |
| 3786904 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.60 | 53.0 | 3.42e-01 | 100.0% | 75.5% |
| 3572303 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.60 | 50.0 | 4.26e-01 | 90.1% | 73.1% |
| 3497511 | 109.4.1.1303 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_PRP39_N, HAT_PRP39_C | 0.60 | 46.0 | 2.71e-01 | 81.5% | 11.9% |
| 3509109 | 601.1.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin | 0.60 | 46.0 | 4.15e-01 | 84.0% | 83.5% |
| 3102719 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.59 | 45.0 | 3.62e-01 | 84.0% | 44.9% |
| 3738329 | 109.4.1.554 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Neurochondrin | 0.58 | 46.0 | 2.92e-01 | 91.4% | 36.5% |
| 3262867 | 1203.1.1.0 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Drosophila SD2 | 0.57 | 47.0 | 3.36e-01 | 91.4% | 71.8% |
| 3584854 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.57 | 44.0 | 3.89e-01 | 85.2% | 78.4% |
| 4498171 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.57 | 37.0 | 3.84e-01 | 87.7% | 72.0% |
| 3692481 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 44.0 | 3.12e-01 | 85.2% | 40.4% |
| 1019367 | 180.1.1.4 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › VCPO_2nd | 0.56 | 41.0 | 2.76e-01 | 79.0% | 53.1% |
| None | — | 0.56 | 46.0 | 3.23e-01 | 92.6% | 40.5% | |
| 3690226 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.56 | 45.0 | 3.94e-01 | 90.1% | 80.8% |
| 3887944 | 3277.2.1.1 ↗ | alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C | 0.54 | 39.0 | 3.47e-01 | 77.8% | 53.0% |
| 4554825 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.52 | 35.0 | 3.42e-01 | 87.7% | 63.3% |
| 3699201 | 109.4.1.170 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CLASP_N | 0.51 | 42.0 | 2.97e-01 | 92.6% | 61.5% |
| 1712229 | 3069.1.1.1 ↗ | alpha arrays › BART › BART › BART › ARL2_Bind_BART | 0.51 | 42.0 | 3.62e-01 | 91.4% | 64.1% |