DNA_packaging_protein_UL32

Euk-Vir

Gallid_alphaherpesvirus_2

DNA_packaging_protein_UL32__YP_001033961__Gallid_alphaherpesvirus_2__10390

Identity

71.6 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Gallid_alphaherpesvirus_2

TaxID: 10390

View cluster (76 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 336-344_456-640

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	336.5	5.00e-100	97.4%	35.1%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1vpdA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.50	32.0	3.81e-01	84.0%	93.9%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4519331	2008.1.1.59 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1	0.50	36.0	2.85e-01	71.1%	92.5%

D2 medium residues 39-59_79-192_442-455

PDB

Domain cluster: rep: DNA_cleavage_packaging_protein__YP_009207093__Hawaiian_green_turtle_herpesvirus__70564__D1-103_380-397

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	209.1	2.10e-61	78.5%	21.5%

D3 medium residues 381-441

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	59.6	4.20e-16	100.0%	11.1%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1br0A00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.67	49.0	3.96e-01	78.7%	92.5%
2crbA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.67	49.0	4.21e-01	77.0%	80.4%
4oydB00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.60	49.0	3.98e-01	90.2%	65.0%
3p3lA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.59	50.0	3.09e-01	98.4%	16.4%
1udyA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.54	38.0	3.07e-01	75.4%	63.3%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4187493	603.1.1.103 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732	0.68	56.0	4.19e-01	88.5%	77.9%
3921091	603.1.1.103 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732	0.66	54.0	4.06e-01	88.5%	69.7%
3516461	603.1.1.103 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732	0.63	51.0	4.23e-01	90.2%	65.5%
3235726	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.59	50.0	3.72e-01	96.7%	43.8%