DNA_packaging_protein_UL32

Euk-Vir

Saimiriine_betaherpesvirus_4

DNA_packaging_protein_UL32__YP_004940225__Saimiriine_betaherpesvirus_4__1535247

Identity

84.5 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Saimiriine_betaherpesvirus_4

TaxID: 1535247

View cluster (76 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 87-182

PDB

Domain cluster: rep: DNA_cleavage_packaging_protein__YP_009207093__Hawaiian_green_turtle_herpesvirus__70564__D1-103_380-397

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	105.4	5.40e-30	99.0%	17.9%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3axjB01	1.20.58.190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1	0.62	43.0	3.70e-01	71.9%	54.2%
8ek4A01	1.20.120.20	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein	0.61	42.0	3.76e-01	70.8%	85.7%
5z7qA00	1.20.1330.10	Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain	0.59	43.0	3.47e-01	75.0%	62.5%
1yhuB00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.58	49.0	4.36e-01	96.9%	98.6%
1oj6A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.57	45.0	3.92e-01	85.4%	97.3%
1b5lA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.56	48.0	4.18e-01	95.8%	96.7%
3no6A00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.56	44.0	3.37e-01	85.4%	75.3%
1tjlA00	1.20.120.910	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain	0.56	39.0	3.45e-01	72.9%	84.1%
1xdxA01	3.30.1140.40	Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1	0.53	39.0	3.91e-01	78.1%	91.0%
4bwcA02	1.10.439.20	Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2	0.50	37.0	3.56e-01	80.2%	70.1%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3641811	632.7.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain	0.67	51.0	5.31e-01	81.2%	91.1%
4828003	310.2.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF	0.65	46.0	4.20e-01	71.9%	89.3%
3476351	604.4.1.0 ↗	alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP	0.60	44.0	4.63e-01	87.5%	87.1%
2330599	601.51.1.2 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin › Flagellin_N,Flagellin_C	0.59	43.0	3.47e-01	75.0%	62.5%
3391469	109.4.1.934 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ATR	0.58	32.0	3.19e-01	99.0%	49.0%
5032495	2008.1.1.36 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EcoRII-C	0.58	41.0	3.01e-01	72.9%	72.3%
51165	106.1.1.0 ↗	alpha arrays › Globin-like › Globin-like › Globin-like	0.56	46.0	4.00e-01	91.7%	93.6%
51190	106.1.1.0 ↗	alpha arrays › Globin-like › Globin-like › Globin-like	0.54	45.0	3.87e-01	92.7%	96.1%
3744818	101.1.1.213 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HRI2_3H	0.53	35.0	3.81e-01	100.0%	85.3%

D2 medium residues 218-245_478-515

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	28.4	1.20e-06	90.9%	6.6%

D3 medium residues 262-319

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3c7aA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.53	44.0	3.17e-01	100.0%	31.3%
3v33B00	3.40.50.11980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.53	38.0	2.84e-01	77.6%	75.6%

D4 medium residues 320-435

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_010084958__Beluga_whale_alphaherpesvirus_1__1434720__D379-511

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	108.6	5.80e-31	100.0%	17.7%