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DNA_packaging_protein_UL32

Euk-Vir

Elephantid_betaherpesvirus_1

DNA_packaging_protein_UL32__YP_007969812__Elephantid_betaherpesvirus_1__146015

Identity

Accession:: YP_007969812 ↗
Protein ID:: DNA_packaging_protein_UL32
Kingdom:: euk

Quality

87.4 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Proboscivirus› Elephantid_betaherpesvirus_1

TaxID: 146015

Cluster

View cluster (76 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-189_378-390

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_009176905__Testudinid_alphaherpesvirus_3__2560801__D32-61_81-232_316-336_452-482

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	62.6	5.00e-17	80.8%	24.7%

D2 high residues 399-449

PDB

Domain cluster: representative

CATH (21)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1tjlA00	1.20.120.910	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain	0.72	52.0	3.74e-01	76.5%	28.3%
8f76A01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.70	59.0	3.73e-01	100.0%	77.6%
1wtyA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.69	58.0	4.58e-01	100.0%	87.1%
3pvuA02	1.10.167.10	Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2	0.69	58.0	5.12e-01	100.0%	82.5%
5mj6A04	1.25.50.20	Mainly Alpha › Alpha Horseshoe › Zincin-like fold ›	0.69	56.0	3.47e-01	94.1%	17.5%
3icxA01	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.68	45.0	4.08e-01	70.6%	100.0%
2ii2A04	1.10.220.10	Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin	0.67	58.0	5.07e-01	100.0%	72.2%
2af0A02	1.10.167.10	Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2	0.67	55.0	4.94e-01	100.0%	78.8%
4od8D00	6.10.140.1880	Special › Helix non-globular › Helix Hairpins ›	0.66	53.0	5.35e-01	96.1%	92.2%
4wzxA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.63	51.0	4.64e-01	98.0%	85.3%
2r6fA02	1.20.1580.10	Mainly Alpha › Up-down Bundle › ABC transporter ATPase like fold › ABC transporter ATPase like domain	0.63	44.0	3.20e-01	76.5%	26.5%
1ze0A01	1.20.120.700	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nitrate reductase, subunit delta (NarJ)	0.62	53.0	4.56e-01	100.0%	82.1%
3tp3A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.60	49.0	3.64e-01	98.0%	75.0%
3c18A02	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.59	48.0	3.83e-01	100.0%	81.4%
2fm8C01	1.10.4150.10	Mainly Alpha › Orthogonal Bundle › SipA N-terminal domain-like › SipA N-terminal domain-like	0.58	47.0	3.26e-01	100.0%	35.4%
1vt0M05	6.10.280.90	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	42.0	3.88e-01	94.1%	58.1%
4htpB00	1.10.3260.10	Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain	0.57	48.0	3.23e-01	100.0%	78.8%
4nnaA01	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.56	46.0	2.85e-01	98.0%	24.7%
2kobA01	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.55	46.0	3.88e-01	98.0%	55.9%
2da4A01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.52	39.0	3.68e-01	98.0%	65.2%
5mmiJ02	1.10.10.250	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain	0.51	40.0	3.75e-01	96.1%	88.4%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4954233	2004.1.1.49 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase	0.79	53.0	3.68e-01	70.6%	23.0%
3878682	11.12.1.1 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD	0.77	52.0	3.41e-01	70.6%	18.1%
3488968	601.33.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain	0.75	65.0	5.39e-01	100.0%	65.3%
4641449	10.12.1.8 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding	0.75	53.0	3.79e-01	76.5%	27.1%
3884327	192.15.1.0 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains	0.74	53.0	4.43e-01	76.5%	44.4%
3820045	603.1.1.118 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF7610	0.74	63.0	5.39e-01	100.0%	87.1%
3482224	192.10.1.0 ↗	alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain	0.71	61.0	5.74e-01	100.0%	87.7%
5052538	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.70	50.0	4.34e-01	76.5%	50.0%
3246839	109.58.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain	0.69	58.0	4.88e-01	98.0%	75.6%
4002563	192.8.1.303 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Tmemb_cc2	0.68	49.0	3.42e-01	78.4%	22.8%
3486248	6132.1.1.0 ↗	alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain	0.68	59.0	5.47e-01	100.0%	87.7%
3940806	524.1.1.1 ↗	alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC	0.66	54.0	3.79e-01	100.0%	27.4%
4260426	3718.1.1.1 ↗	alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT	0.64	54.0	4.47e-01	100.0%	66.0%
4168975	4048.1.1.0 ↗	alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases	0.57	45.0	4.12e-01	100.0%	64.0%
3330824	7018.1.1.1 ↗	few secondary structure elements › gp76 helical domain › gp76 helical domain › gp76 helical domain › FAM91_C	0.54	42.0	3.64e-01	92.2%	72.2%

D3 medium residues 204-270

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3lcnB00	1.10.340.40	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain	0.59	41.0	3.66e-01	73.1%	87.6%
4djaA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.52	39.0	3.01e-01	80.6%	69.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3739771	101.1.8.0 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes	0.52	40.0	3.69e-01	85.1%	88.9%
3222176	207.1.1.0 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats	0.50	35.0	2.41e-01	79.1%	58.8%

D4 medium residues 271-376

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_010084958__Beluga_whale_alphaherpesvirus_1__1434720__D379-511

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	90.3	2.00e-25	100.0%	19.8%