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DNA_packaging_protein_UL32

Euk-Vir

Equid_gammaherpesvirus_5

DNA_packaging_protein_UL32__YP_009118459__Equid_gammaherpesvirus_5__10371

Identity

Accession:: YP_009118459 ↗
Protein ID:: DNA_packaging_protein_UL32
Kingdom:: euk

Quality

81.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Percavirus› Equid_gammaherpesvirus_5

TaxID: 10371

Cluster

View cluster (76 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-153

PDB

Domain cluster: rep: DNA_cleavage_packaging_protein__YP_009207093__Hawaiian_green_turtle_herpesvirus__70564__D1-103_380-397

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	44.1	2.10e-11	85.8%	17.2%

D2 medium residues 154-180_483-508

PDB

Domain cluster: representative

CATH (21)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2xokP00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.75	44.0	3.88e-01	100.0%	41.9%
1s35A01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.69	56.0	4.60e-01	92.5%	95.0%
1w0bA01	1.20.58.420	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP	0.65	44.0	3.61e-01	100.0%	40.2%
2f22A00	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.65	56.0	4.15e-01	100.0%	56.3%
1ku9A02	1.10.287.450	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.64	43.0	4.02e-01	100.0%	57.8%
1nktA04	1.10.3060.10	Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA	0.62	50.0	3.45e-01	88.7%	57.1%
1lvfB00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.61	50.0	4.19e-01	98.1%	97.1%
3ns4A00	1.10.357.110	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Vacuolar protein sorting-associated protein 53, C-terminus	0.61	50.0	3.39e-01	94.3%	50.7%
2mtqA00	1.20.58.130	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.61	50.0	4.63e-01	98.1%	98.6%
1z0pA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.59	42.0	3.71e-01	73.6%	97.3%
4u1cA01	4.10.860.10	Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain	0.58	46.0	4.67e-01	83.0%	100.0%
3ehfD01	1.20.5.1930	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.58	42.0	3.99e-01	77.4%	71.4%
6a3kA00	1.20.120.10	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562	0.57	44.0	3.53e-01	94.3%	79.8%
2e62A01	6.10.140.420	Special › Helix non-globular › Helix Hairpins ›	0.57	41.0	4.22e-01	81.1%	78.8%
3sjqC00	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.57	44.0	3.73e-01	79.2%	58.7%
1rv2D04	1.10.287.690	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain	0.56	39.0	3.60e-01	75.5%	64.3%
2g8lB01	1.10.8.380	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1	0.54	46.0	4.28e-01	96.2%	97.0%
2i7uA00	6.10.250.1010	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.54	38.0	3.69e-01	77.4%	77.4%
1oizA01	1.10.8.20	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p	0.53	41.0	3.75e-01	84.9%	69.4%
7vkcA01	1.10.1070.20	Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 ›	0.53	46.0	3.25e-01	98.1%	81.8%
3anwA01	1.20.58.1030	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	45.0	3.56e-01	98.1%	77.0%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3256137	601.4.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains	0.66	54.0	3.96e-01	94.3%	68.7%
3175548	524.1.1.1 ↗	alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC	0.65	44.0	2.97e-01	71.7%	28.9%
2141223	5055.1.1.1 ↗	extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › CaMBD	0.60	42.0	3.43e-01	73.6%	56.8%
3749862	605.1.1.178 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › TMEM215	0.60	44.0	4.19e-01	77.4%	68.3%
3617959	3922.1.1.0 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3	0.53	43.0	3.39e-01	100.0%	44.7%
3472739	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	42.0	2.84e-01	96.2%	31.7%
3344802	6158.1.1.0 ↗	alpha bundles › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region	0.52	40.0	3.76e-01	83.0%	80.0%
3169041	213.1.1.62 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ATE_N+ATE_C	0.51	44.0	2.65e-01	100.0%	27.0%

D3 medium residues 281-366

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_009552534__Eptesicus_fuscus_gammaherpesvirus__2035399__D277-340

D4 medium residues 367-463_509-541

PDB

Domain cluster: rep: UL32__YP_003084389__Anatid_alphaherpesvirus_1__104388__D478-566

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	63.6	2.50e-17	95.4%	22.3%