DNA_packaging_protein_UL32

Euk-Vir

Macaca_nemestrina_herpesvirus_7

DNA_packaging_protein_UL32__YP_009253940__Macaca_nemestrina_herpesvirus_7__1846169

Identity

88.9 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Roseolovirus› macacine_betaherpesvirus_9

TaxID: 1846169

Singleton — not in a non-trivial cluster

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-29_51-159_198-215

PDB

Domain cluster: rep: DNA_cleavage_packaging_protein__YP_009207093__Hawaiian_green_turtle_herpesvirus__70564__D1-103_380-397

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	106.8	2.10e-30	90.6%	19.8%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6wfqC01	1.20.120.530	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like	0.55	39.0	4.01e-01	73.2%	79.6%
1rp3A01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.54	29.0	3.64e-01	82.6%	87.1%
2rkhA02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.53	27.0	3.53e-01	77.2%	93.4%

D2 high residues 220-399

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_010084958__Beluga_whale_alphaherpesvirus_1__1434720__D379-511

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	104.1	1.30e-29	100.0%	22.6%

D3 medium residues 428-483

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_007969812__Elephantid_betaherpesvirus_1__146015__D399-449

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	33.6	3.20e-08	100.0%	9.6%