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DNA_packaging_protein_UL32

Euk-Vir

Beluga_whale_alphaherpesvirus_1

DNA_packaging_protein_UL32__YP_010084958__Beluga_whale_alphaherpesvirus_1__1434720

Identity

Accession:: YP_010084958 ↗
Protein ID:: DNA_packaging_protein_UL32
Kingdom:: euk

Quality

85.9 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Beluga_whale_alphaherpesvirus_1

TaxID: 1434720

Cluster

View cluster (76 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 45-70_86-204

PDB

Domain cluster: rep: DNA_cleavage_packaging_protein__YP_009207093__Hawaiian_green_turtle_herpesvirus__70564__D1-103_380-397

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	161.0	7.50e-47	82.8%	20.9%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4huqS00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.60	41.0	3.97e-01	70.3%	87.2%
1dgnA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.59	34.0	4.08e-01	76.6%	89.9%
1hm7B00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.55	38.0	3.04e-01	70.3%	73.1%
6lw5A01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.53	38.0	3.04e-01	72.4%	91.1%
4dloB02	1.25.40.610	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.53	29.0	3.20e-01	90.3%	65.8%
4hfvA01	1.20.1440.330	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.51	36.0	3.96e-01	72.4%	94.9%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3596044	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.54	40.0	4.38e-01	82.8%	94.2%
4062922	140.1.1.4 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2	0.53	37.0	3.81e-01	71.0%	95.6%
5070824	140.1.1.7 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2	0.51	36.0	3.66e-01	73.1%	89.7%
3940746	5067.1.1.3 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched	0.51	35.0	3.21e-01	71.0%	74.0%

D2 medium residues 205-243_256-308_512-573

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_009046530__Falconid_herpesvirus_1__1510155__D226-251_307-343_606-663

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	61.3	1.30e-16	60.4%	17.4%
PF01673.24	Herpes_env	87.5	1.40e-24	40.9%	11.7%

D3 medium residues 309-378

PDB

Domain cluster: rep: DNA_packaging_protein__YP_009664647__Bubaline_alphaherpesvirus_1__202910__D339-391

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	35.3	9.20e-09	97.1%	11.7%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1lfkA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.65	50.0	3.14e-01	82.9%	15.5%
4id0A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.60	44.0	3.79e-01	78.6%	71.4%
3bvoA02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.59	42.0	3.91e-01	74.3%	61.6%
4gf0A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.59	41.0	3.58e-01	74.3%	71.7%
3bujA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.58	48.0	3.06e-01	95.7%	78.1%
3u9jA00	1.20.120.520	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like	0.57	42.0	3.25e-01	78.6%	39.5%
2xkrA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.57	49.0	3.09e-01	98.6%	78.7%
4f92B10	1.10.3380.10	Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain	0.55	44.0	3.66e-01	92.9%	59.4%
3hgtA00	3.40.50.12360	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.55	43.0	2.86e-01	82.9%	86.4%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4929461	1075.5.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter	0.65	46.0	3.35e-01	74.3%	30.9%
3742245	109.4.1.1276 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, HEAT_ATR	0.63	50.0	3.59e-01	88.6%	86.8%
3246171	109.4.1.33 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT	0.61	51.0	3.50e-01	91.4%	67.1%
3955636	604.12.1.106 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF28475	0.61	43.0	4.24e-01	78.6%	69.3%
3925770	4156.1.1.1 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63	0.59	45.0	3.91e-01	85.7%	70.8%
4996586	2484.1.1.124 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605	0.59	42.0	3.42e-01	77.1%	58.6%
1344564	601.4.1.6 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › TorS_sensor_domain	0.58	43.0	4.02e-01	78.6%	63.6%
3728304	604.12.1.24 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF6604	0.58	43.0	3.86e-01	80.0%	76.0%
3198311	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.57	42.0	3.07e-01	80.0%	80.5%
3732909	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.56	41.0	3.98e-01	78.6%	68.8%
3955489	2484.1.1.211 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB	0.56	43.0	3.04e-01	81.4%	41.0%
4867395	3820.1.1.1 ↗	a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI	0.51	39.0	3.00e-01	80.0%	64.1%

D4 medium residues 379-511

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	173.5	1.20e-50	100.0%	25.9%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2rn7A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.66	32.0	4.35e-01	75.9%	90.9%
2kjgA00	1.20.120.970	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.60	42.0	4.72e-01	80.5%	97.0%
1m56C02	1.20.120.80	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle	0.53	38.0	3.39e-01	74.4%	92.9%
1vctA01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.52	28.0	3.08e-01	88.7%	61.5%
1t72A01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.52	28.0	3.01e-01	72.2%	57.3%
2e6oA00	1.10.30.10	Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain	0.52	31.0	3.70e-01	79.7%	89.7%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
136703	3808.1.1.1 ↗	alpha arrays › Archaeal protein SSO6904 › Archaeal protein SSO6904 › Archaeal protein SSO6904 › Ca_bind_SSO6904	0.60	42.0	4.72e-01	80.5%	97.0%
3971692	5060.2.1.0 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain	0.58	41.0	4.27e-01	72.9%	93.6%
3188832	109.3.1.87 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › FUSC_2	0.54	39.0	3.67e-01	74.4%	81.8%
3302202	3745.1.1.1 ↗	alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex	0.53	46.0	3.52e-01	99.2%	87.6%
1019365	604.5.1.2 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU	0.52	28.0	3.03e-01	72.2%	58.3%
3193567	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.52	30.0	2.84e-01	75.2%	44.8%
3777122	109.46.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › CTLH	0.51	36.0	3.55e-01	73.7%	69.3%
5005528	604.5.1.2 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU	0.51	28.0	3.14e-01	74.4%	68.0%
3473495	176.1.1.1 ↗	alpha arrays › Annexin › Annexin › Annexin › Annexin	0.51	26.0	3.09e-01	70.7%	72.9%
3900501	176.1.1.1 ↗	alpha arrays › Annexin › Annexin › Annexin › Annexin	0.51	26.0	3.09e-01	72.2%	71.8%