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DNA_packaging_protein_UL32

Euk-Vir

Human_gammaherpesvirus_4

DNA_packaging_protein_UL32__YP_401648__Human_gammaherpesvirus_4__10376

Identity

Accession:: YP_401648 ↗
Protein ID:: DNA_packaging_protein_UL32
Kingdom:: euk

Quality

80.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Lymphocryptovirus› human_gammaherpesvirus_4

TaxID: 10376

Cluster

View cluster (76 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 54-220_283-343

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_009176905__Testudinid_alphaherpesvirus_3__2560801__D32-61_81-232_316-336_452-482

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	56.8	3.00e-15	61.4%	17.0%

D2 medium residues 344-451

PDB

Domain cluster: rep: UL32__YP_003084389__Anatid_alphaherpesvirus_1__104388__D478-566

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	49.9	3.60e-13	97.2%	19.6%

D3 medium residues 452-525

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_009042094__Fruit_bat_alphaherpesvirus_1__1343901__D516-583

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	37.5	2.00e-09	100.0%	13.4%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ckyA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.70	48.0	3.98e-01	71.6%	76.1%
4dllB02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.70	49.0	4.06e-01	73.0%	79.2%
5nl6A02	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.68	46.0	4.04e-01	70.3%	80.6%
1k3kA00	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.63	44.0	3.55e-01	74.3%	45.9%
6igxD01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.60	44.0	3.03e-01	77.0%	50.0%
2lhrA00	1.20.58.1270	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	41.0	4.08e-01	82.4%	73.1%
1ze0A01	1.20.120.700	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nitrate reductase, subunit delta (NarJ)	0.57	40.0	3.91e-01	75.7%	83.3%
6vudA01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.55	39.0	3.53e-01	77.0%	90.8%
2x6hA01	1.25.40.70	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK)	0.52	38.0	2.96e-01	81.1%	49.5%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4282122	192.15.1.134 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › PF27742	0.73	50.0	4.02e-01	71.6%	57.9%
3733935	3924.1.1.0 ↗	alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2	0.69	48.0	3.02e-01	73.0%	15.6%
3803192	129.1.1.16 ↗	alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11	0.68	47.0	3.85e-01	71.6%	76.3%
3445225	2484.1.1.110 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE	0.64	42.0	2.88e-01	77.0%	18.5%
3404242	109.2.1.14 ↗	alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › DUF608	0.62	52.0	3.18e-01	89.2%	24.5%
3891733	632.10.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Coronavirus NSP7-like › Coronavirus NSP7-like	0.62	45.0	4.06e-01	78.4%	55.2%
3771070	627.1.1.1 ↗	alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9	0.61	44.0	3.50e-01	75.7%	65.2%
3689256	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.61	43.0	3.14e-01	74.3%	82.3%
3175191	627.1.1.1 ↗	alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9	0.61	43.0	3.33e-01	74.3%	55.3%
3259602	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.60	41.0	3.73e-01	73.0%	52.0%
3993765	627.1.1.0 ↗	alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain	0.60	42.0	4.06e-01	74.3%	71.8%
3589750	186.1.1.5 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3	0.59	41.0	3.70e-01	73.0%	92.4%
3515268	186.2.1.0 ↗	alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain	0.57	43.0	3.87e-01	81.1%	95.2%
1544863	109.21.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleopor_Nup85	0.57	39.0	3.04e-01	73.0%	33.2%