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DNA_packaging_protein
Euk-VirAlcelaphine_gammaherpesvirus_1
DNA_packaging_protein__NP_065527__Alcelaphine_gammaherpesvirus_1__35252
Identity
- Accession:
- NP_065527 ↗
- Protein ID:
- DNA_packaging_protein
- Kingdom:
- euk
Quality
74.5
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Macavirus›
Alcelaphine_gammaherpesvirus_1
TaxID: 35252
Cluster
View cluster (63 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 443-679
Domain cluster:
rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00331__D317-603
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02499.23 best | DNA_pack_C | 315.0 | 9.10e-94 | 100.0% | 66.4% |
D2
medium
residues 1-29_53-79
D3
medium
residues 209-364
Domain cluster:
rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03237.22 best | Terminase_6N | 36.1 | 7.50e-09 | 93.0% | 62.8% |
| PF02500.23 | DNA_pack_N | 188.8 | 2.30e-55 | 65.4% | 37.3% |
| PF02499.23 | DNA_pack_C | 36.5 | 4.50e-09 | 18.6% | 8.3% |
D4
medium
residues 365-427