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DNA_packaging_protein

Euk-Vir

Murine_roseolovirus

DNA_packaging_protein__YP_009344879__Murine_roseolovirus__1940555

Identity

Accession:: YP_009344879 ↗
Protein ID:: DNA_packaging_protein
Kingdom:: euk

Quality

73.5 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Roseolovirus› Murine_roseolovirus

TaxID: 1940555

Cluster

View cluster (76 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-60_72-103

PDB

D2 medium residues 123-153_172-300_333-358_533-544

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_009176905__Testudinid_alphaherpesvirus_3__2560801__D32-61_81-232_316-336_452-482

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	94.9	8.40e-27	79.8%	23.0%

D3 medium residues 312-332_545-584

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2q0oC00	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.67	51.0	4.56e-01	86.9%	58.1%
1yg2A02	6.10.140.190	Special › Helix non-globular › Helix Hairpins ›	0.62	48.0	4.22e-01	93.4%	56.7%
2c35A00	1.20.1250.40	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › RNA Polymerase II, Rpb4 subunit	0.59	41.0	3.31e-01	73.8%	73.4%
1evsA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.58	50.0	3.74e-01	100.0%	63.8%
4errB00	1.20.58.1190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.56	41.0	3.84e-01	82.0%	71.1%
4gltA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.56	47.0	3.95e-01	100.0%	62.3%
3fxdB00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	40.0	4.13e-01	91.8%	84.5%
2kg7B00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.53	41.0	3.61e-01	86.9%	56.7%
3na7A00	1.10.287.1490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.53	42.0	2.84e-01	88.5%	70.5%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3625252	102.1.1.11 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4	0.76	52.0	4.17e-01	100.0%	36.7%
3708648	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.68	53.0	3.31e-01	100.0%	16.0%
3853458	192.29.1.1 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom	0.65	49.0	4.32e-01	90.2%	53.7%
4347815	2004.1.1.45 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V	0.62	43.0	2.77e-01	73.8%	27.0%
3535523	1073.1.1.11 ↗	alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › WWC1	0.61	47.0	4.61e-01	93.4%	76.9%
3433018	904.1.1.0 ↗	few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain	0.60	47.0	4.98e-01	86.9%	100.0%
5052725	3826.1.1.0 ↗	alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR)	0.53	45.0	4.37e-01	100.0%	87.1%
4242867	544.1.1.2 ↗	alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › SRA1	0.52	42.0	3.36e-01	90.2%	64.8%
4275199	601.14.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin	0.52	43.0	3.54e-01	100.0%	72.8%

D4 medium residues 359-393_459-476

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1zk8A01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.53	37.0	3.96e-01	73.6%	84.8%
7esrA01	3.40.800.10	Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain	0.50	37.0	2.30e-01	81.1%	46.6%

D5 medium residues 394-458_477-532_585-600

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_010084958__Beluga_whale_alphaherpesvirus_1__1434720__D379-511

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	86.1	3.80e-24	93.4%	22.3%