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DNA_packaging_tegument_protein_UL17
Euk-VirHuman_alphaherpesvirus_3
DNA_packaging_tegument_protein_UL17__NP_040166__Human_alphaherpesvirus_3__10335
Identity
- Accession:
- NP_040166 ↗
- Protein ID:
- DNA_packaging_tegument_protein_UL17
- Kingdom:
- euk
Quality
78.8
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Human_alphaherpesvirus_3
TaxID: 10335
Cluster
View cluster (39 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-153_355-391
Domain cluster:
rep: ORF32__YP_010084395__Retroperitoneal_fibromatosis-associated_herpesvirus__111469__D1-125_229-267
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04559.18 best | Herpes_UL17 | 154.4 | 7.20e-45 | 81.0% | 28.1% |
D2
medium
residues 159-224_327-354
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8jpdG01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.64 | 39.0 | 3.35e-01 | 89.4% | 39.3% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.62 | 42.0 | 4.60e-01 | 89.4% | 86.7% |
| 4nuuB02 | 1.20.58.830 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 29.0 | 2.67e-01 | 71.3% | 37.4% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.54 | 47.0 | 4.57e-01 | 100.0% | 85.3% |
| 2b5dX02 | 1.20.1430.10 | Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain | 0.52 | 41.0 | 3.88e-01 | 89.4% | 70.2% |
| 2rccA01 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.51 | 43.0 | 3.21e-01 | 94.7% | 81.1% |
| 3d6jA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 29.0 | 3.36e-01 | 95.7% | 77.6% |
| 1td6A03 | 1.10.472.40 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 | 0.50 | 35.0 | 3.58e-01 | 92.6% | 75.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4272227 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.56 | 46.0 | 3.26e-01 | 89.4% | 94.3% |
| 3492656 | 6157.1.1.1 ↗ | alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP | 0.56 | 47.0 | 4.15e-01 | 89.4% | 85.4% |
| 3549992 | 7004.1.1.0 ↗ | 0.53 | 28.0 | 2.68e-01 | 73.4% | 42.3% | |
| 3726423 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.52 | 43.0 | 3.48e-01 | 89.4% | 61.7% |
| 3972311 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.52 | 40.0 | 2.88e-01 | 84.0% | 67.1% |
| 3603904 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.51 | 31.0 | 3.20e-01 | 81.9% | 62.2% |
| 2946 | 4979.1.1.1 ↗ | alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › C-terminal domain of Hypothetical protein MPN330 › C-terminal domain of Hypothetical protein MPN330 › DUF3196 | 0.50 | 35.0 | 3.58e-01 | 92.6% | 75.0% |
D3
medium
residues 437-475_516-547_651-673
Domain cluster:
rep: DNA_packaging_tegument_protein_UL17__YP_009137091__Human_alphaherpesvirus_1__10298__D469-503_538-573_680-694
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 37.0 | 3.50e-01 | 88.3% | 50.9% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.53 | 37.0 | 4.07e-01 | 91.5% | 89.5% |
| 6lumD01 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.53 | 38.0 | 3.42e-01 | 87.2% | 56.0% |
D4
medium
residues 476-515_548-650
Domain cluster:
rep: DNA_packaging_tegument_protein__YP_009227250__Macropodid_alphaherpesvirus_1__137443__D518-541_577-686
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04559.18 best | Herpes_UL17 | 98.1 | 8.20e-28 | 99.3% | 26.9% |