DNA_packaging_tegument_protein_UL17

Euk-Vir

Bovine_alphaherpesvirus_1

DNA_packaging_tegument_protein_UL17__NP_045343__Bovine_alphaherpesvirus_1__10320

Identity

77.0 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› bovine_alphaherpesvirus_1

TaxID: 10320

View cluster (39 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-44_63-174_378-415

PDB

Domain cluster: rep: ORF32__YP_010084395__Retroperitoneal_fibromatosis-associated_herpesvirus__111469__D1-125_229-267

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04559.18 best	Herpes_UL17	151.9	4.00e-44	82.0%	28.1%
PF04559.18	Herpes_UL17	27.3	2.30e-06	20.1%	6.8%

D2 high residues 502-689

PDB

Domain cluster: rep: DNA_packaging_tegument_protein_UL17__YP_009046511__Falconid_herpesvirus_1__1510155__D494-717

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04559.18 best	Herpes_UL17	107.3	1.40e-30	91.0%	26.9%

D3 medium residues 182-272_357-377

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04559.18 best	Herpes_UL17	37.7	1.70e-09	81.2%	11.9%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4btfA01	1.20.930.20	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain	0.56	36.0	3.84e-01	91.1%	73.0%
4m0mA03	1.20.1270.430	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.54	36.0	4.17e-01	100.0%	94.9%
3behB01	1.20.120.540	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels	0.53	32.0	3.25e-01	92.9%	59.0%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3453492	611.9.1.4 ↗	alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N	0.53	38.0	3.66e-01	91.1%	65.6%
161395	101.1.8.0 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes	0.52	25.0	2.67e-01	75.9%	51.5%
3267993	3252.2.1.0 ↗	alpha arrays › SHQ1 C-terminal domain-like › Anaphase-promoting complex subunit 5 N-terminal domain › Anaphase-promoting complex subunit 5 N-terminal domain	0.52	39.0	3.41e-01	79.5%	90.0%
2388794	101.1.2.88 ↗	alpha arrays › HTH › HTH › winged helix domain › Dimerisation	0.52	32.0	3.07e-01	81.2%	50.7%
3587205	633.2.1.1 ↗	alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun	0.51	34.0	3.71e-01	100.0%	84.4%

D4 medium residues 416-466

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3aa0B01	1.20.58.570	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain	0.56	45.0	3.96e-01	98.0%	72.7%
3a7rA02	3.30.390.50	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain	0.54	41.0	3.55e-01	88.2%	56.2%
2iieA01	4.10.520.10	Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins	0.51	35.0	2.80e-01	90.2%	34.3%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4989808	210.1.3.0 ↗	a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases	0.54	44.0	3.01e-01	100.0%	52.9%