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DNA_packaging_tegument_protein_UL17

Euk-Vir

Saimiriine_betaherpesvirus_4

DNA_packaging_tegument_protein_UL17__YP_004940255__Saimiriine_betaherpesvirus_4__1535247

Identity

Accession:
YP_004940255 ↗
Protein ID:
DNA_packaging_tegument_protein_UL17
Kingdom:
euk

Quality

75.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Saimiriine_betaherpesvirus_4

TaxID: 1535247

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-146_239-280
PDB
Domain cluster: rep: ORF32__YP_010084395__Retroperitoneal_fibromatosis-associated_herpesvirus__111469__D1-125_229-267
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04559.18 best Herpes_UL17 43.2 3.70e-11 78.7% 27.7%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fmrB01 2.70.50.70 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › 0.64 34.0 3.83e-01 84.0% 64.4%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 30.0 4.14e-01 93.6% 87.4%
7bi2A02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.62 41.0 4.79e-01 87.8% 93.9%
1qunI01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 35.0 4.27e-01 86.7% 88.7%
2woyA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 38.0 3.93e-01 76.1% 71.4%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.56 34.0 3.53e-01 92.0% 64.0%
4n8nA00 3.30.70.3040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 32.0 4.05e-01 85.6% 100.0%
1grwA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 32.0 3.80e-01 89.4% 83.1%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 23.0 3.30e-01 71.3% 84.1%
4pbdA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 26.0 3.38e-01 81.4% 82.4%
5mw5A01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 4.51e-01 85.6% 100.0%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.53 30.0 3.20e-01 85.6% 60.2%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 31.0 3.70e-01 78.7% 87.1%
7altB01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 4.45e-01 86.2% 100.0%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 23.0 3.31e-01 87.8% 100.0%
3fbqA01 2.60.40.1630 Mainly Beta › Sandwich › Immunoglobulin-like › bacillus anthracis domain 0.51 37.0 4.18e-01 95.2% 98.6%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079076 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.67 36.0 4.76e-01 76.6% 97.0%
5016188 11.1.1.138 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NPCBM_assoc 0.67 36.0 4.53e-01 88.8% 85.2%
3863526 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.65 34.0 4.28e-01 87.2% 82.6%
4113909 11.1.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M 0.65 35.0 4.39e-01 88.3% 87.3%
5070710 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 34.0 4.45e-01 87.8% 94.0%
3448024 11.1.1.558 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF6598 0.64 41.0 4.77e-01 84.6% 89.5%
3762105 11.1.1.1118 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28312 0.63 42.0 4.85e-01 87.2% 92.6%
3494613 11.1.1.54 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.63 39.0 4.16e-01 88.3% 70.6%
5027926 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 34.0 4.15e-01 88.3% 82.5%
5057155 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 34.0 4.19e-01 87.8% 85.2%
3661011 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.61 46.0 4.86e-01 88.3% 88.1%
5083765 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 37.0 4.32e-01 86.7% 85.4%
3975948 11.1.1.10 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_N 0.60 34.0 4.17e-01 88.3% 85.8%
3566385 11.2.1.15 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › cPLA2_C2 0.60 41.0 4.72e-01 87.2% 99.2%
5069269 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 32.0 4.06e-01 87.2% 87.3%
5061160 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 34.0 4.12e-01 88.3% 84.8%
3959431 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 30.0 4.04e-01 76.1% 92.9%
1933551 11.1.1.323 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › AIMA-like_N 0.59 33.0 3.96e-01 87.2% 79.7%
3997541 11.1.1.13 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Motile_Sperm 0.59 32.0 3.73e-01 88.8% 73.1%
3344799 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 38.0 4.41e-01 83.5% 89.3%
5067975 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 31.0 3.87e-01 87.8% 83.5%
3502138 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 32.0 3.81e-01 88.3% 79.2%
4551334 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 38.0 4.30e-01 94.1% 92.1%
3953119 304.4.1.21 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › FtsX_ECD 0.55 32.0 4.01e-01 85.6% 99.0%
5044136 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 32.0 3.78e-01 87.2% 84.0%
3256250 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 36.0 4.01e-01 87.2% 84.8%
2625081 11.1.1.339 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MtrC-MtrF_N 0.53 36.0 4.02e-01 87.8% 88.2%
3218690 11.1.1.790 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FN-plug_TEN1-4 0.52 36.0 3.48e-01 90.4% 63.4%
3190860 11.1.1.55 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mo-co_dimer 0.51 35.0 3.96e-01 91.0% 89.7%
4032831 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.51 31.0 3.52e-01 78.7% 80.7%
4958519 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 32.0 3.47e-01 85.1% 74.2%
3238322 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 29.0 3.31e-01 74.5% 72.9%
3456036 11.2.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 0.51 42.0 4.14e-01 89.4% 84.4%
3898187 11.1.1.297 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 0.50 31.0 3.44e-01 88.3% 76.0%
D2 high residues 288-478
PDB
Domain cluster: rep: DNA_packaging_tegument_protein_UL17__YP_009388533__Common_bottlenose_dolphin_gammaherpesvirus_1_strain_Sarasota__2022783__D344-532
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04559.18 best Herpes_UL17 86.2 3.40e-24 87.4% 29.9%