DNA_packaging_tegument_protein_UL17

Euk-Vir

Canid_alphaherpesvirus_1

DNA_packaging_tegument_protein_UL17__YP_009252270__Canid_alphaherpesvirus_1__170325

Identity

77.8 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Canid_alphaherpesvirus_1

TaxID: 170325

View cluster (39 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-44_63-179_370-411

PDB

Domain cluster: rep: ORF32__YP_010084395__Retroperitoneal_fibromatosis-associated_herpesvirus__111469__D1-125_229-267

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04559.18 best	Herpes_UL17	132.9	2.20e-38	79.4%	27.3%
PF04559.18	Herpes_UL17	39.1	6.20e-10	23.8%	8.0%

D2 medium residues 180-266_344-369

PDB

Domain cluster: rep: DNA_packaging_tegument_protein_UL17__NP_045343__Bovine_alphaherpesvirus_1__10320__D182-272_357-377

D3 medium residues 412-467

PDB

Domain cluster: rep: DNA_packaging_tegument_protein_UL17__NP_045343__Bovine_alphaherpesvirus_1__10320__D416-466

D4 medium residues 468-501_521-567

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3r0qA02	2.70.160.11	Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1	0.75	45.0	3.31e-01	70.4%	23.6%
2ewfA02	1.20.1270.310	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.64	47.0	4.72e-01	76.5%	80.2%
3p42A02	6.10.250.2280	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.64	43.0	4.67e-01	70.4%	94.3%
1ulyA02	1.10.20.10	Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A	0.63	45.0	4.18e-01	84.0%	59.4%
3ed5A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.56	31.0	3.15e-01	86.4%	51.2%
4zi3D00	1.20.1520.10	Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain	0.54	46.0	3.94e-01	96.3%	59.4%
2avuB00	1.10.4000.10	Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD	0.52	44.0	4.09e-01	93.8%	75.0%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3488934	6157.1.1.1 ↗	alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP	0.71	51.0	4.36e-01	75.3%	82.3%
3617744	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.68	51.0	4.15e-01	79.0%	88.0%
5055977	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.67	46.0	4.31e-01	71.6%	74.0%
3499902	181.1.1.12 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SCAF11-like_C	0.59	39.0	4.07e-01	77.8%	74.3%
3172240	601.2.1.5 ↗	alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr	0.54	50.0	3.72e-01	100.0%	82.1%

D5 medium residues 502-520_568-688

PDB

Domain cluster: rep: DNA_packaging_tegument_protein__YP_009227250__Macropodid_alphaherpesvirus_1__137443__D518-541_577-686

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04559.18 best	Herpes_UL17	76.6	2.60e-21	82.9%	14.7%