DNA_packaging_tegument_protein_UL17

Euk-Vir

Spheniscid_alphaherpesvirus_1

DNA_packaging_tegument_protein_UL17__YP_009342390__Spheniscid_alphaherpesvirus_1__2560777

Identity

75.0 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Spheniscid_alphaherpesvirus_1

TaxID: 2560777

View cluster (39 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-154_391-425

PDB

Domain cluster: rep: ORF32__YP_010084395__Retroperitoneal_fibromatosis-associated_herpesvirus__111469__D1-125_229-267

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04559.18 best	Herpes_UL17	146.3	2.00e-42	83.1%	28.1%

D2 medium residues 156-234_351-390

PDB

Domain cluster: rep: DNA_packaging_tegument_protein_UL17__NP_045343__Bovine_alphaherpesvirus_1__10320__D182-272_357-377

D3 medium residues 426-480

PDB

Domain cluster: rep: DNA_packaging_tegument_protein_UL17__NP_045343__Bovine_alphaherpesvirus_1__10320__D416-466

D4 medium residues 481-513_547-580_684-705

PDB

Domain cluster: rep: DNA_packaging_tegument_protein_UL17__YP_009137091__Human_alphaherpesvirus_1__10298__D469-503_538-573_680-694

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2l3mA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	32.0	3.53e-01	92.1%	78.9%
2ga8A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.51	41.0	2.78e-01	86.5%	90.6%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3625948	2008.1.1.24 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDCD9	0.56	45.0	2.93e-01	85.4%	62.8%

D5 medium residues 514-546_581-683

PDB

Domain cluster: rep: DNA_packaging_tegument_protein__YP_009227250__Macropodid_alphaherpesvirus_1__137443__D518-541_577-686

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04559.18 best	Herpes_UL17	88.6	6.30e-25	98.5%	26.7%