←Back to structures
DNA_packaging_tegument_protein_UL17
Euk-VirHuman_gammaherpesvirus_4
DNA_packaging_tegument_protein_UL17__YP_401692__Human_gammaherpesvirus_4__10376
Identity
- Accession:
- YP_401692 ↗
- Protein ID:
- DNA_packaging_tegument_protein_UL17
- Kingdom:
- euk
Quality
62.8
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Lymphocryptovirus›
human_gammaherpesvirus_4
TaxID: 10376
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-135_271-328
Domain cluster:
rep: ORF32__YP_010084395__Retroperitoneal_fibromatosis-associated_herpesvirus__111469__D1-125_229-267
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04559.18 best | Herpes_UL17 | 122.7 | 2.90e-35 | 76.7% | 31.9% |
| PF04559.18 | Herpes_UL17 | 26.0 | 6.00e-06 | 31.6% | 11.6% |
D2
high
residues 332-501
Domain cluster:
rep: DNA_packaging_tegument_protein_UL17__YP_009388533__Common_bottlenose_dolphin_gammaherpesvirus_1_strain_Sarasota__2022783__D344-532
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04559.18 best | Herpes_UL17 | 144.0 | 1.00e-41 | 92.9% | 33.3% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e8vA00 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.54 | 27.0 | 3.74e-01 | 72.4% | 98.8% |
| 1x4zA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 30.0 | 3.76e-01 | 77.6% | 93.0% |
| 4lsdF00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 28.0 | 3.59e-01 | 75.9% | 90.8% |
| 2z3gB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.51 | 34.0 | 3.82e-01 | 83.5% | 88.2% |
| 1owwA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 28.0 | 3.66e-01 | 75.9% | 96.8% |
| 5z06B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 27.0 | 3.47e-01 | 75.9% | 92.4% |
| 3b4nA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 27.0 | 3.53e-01 | 77.1% | 97.7% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3199398 | 331.19.1.3 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › CPSF73-100_C | 0.57 | 22.0 | 3.17e-01 | 84.1% | 75.0% |
| 4668665 | 331.2.1.8 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › CPSF73-100_C | 0.55 | 24.0 | 3.17e-01 | 84.1% | 73.3% |
| 3806422 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.55 | 23.0 | 3.17e-01 | 83.5% | 75.3% |
| 2599555 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.55 | 29.0 | 3.48e-01 | 98.2% | 76.6% |
| 3739666 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.55 | 23.0 | 3.04e-01 | 85.9% | 70.0% |
| 3306545 | 331.2.1.8 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › CPSF73-100_C | 0.54 | 23.0 | 3.14e-01 | 83.5% | 75.3% |
| 3263502 | 331.4.1.9 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C | 0.54 | 24.0 | 3.18e-01 | 85.3% | 75.6% |
| 4311623 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.53 | 38.0 | 4.24e-01 | 92.4% | 94.1% |
| 5074928 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.52 | 21.0 | 3.10e-01 | 85.3% | 89.2% |
| 3494489 | 331.9.1.12 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › BBS2_pf | 0.52 | 24.0 | 2.92e-01 | 86.5% | 63.6% |
| 4007865 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.51 | 37.0 | 3.91e-01 | 92.4% | 84.7% |