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DNA_packaging_tegument_protein_UL25
Euk-VirMeleagrid_alphaherpesvirus_1
DNA_packaging_tegument_protein_UL25__NP_073318__Meleagrid_alphaherpesvirus_1__37108
Identity
- Accession:
- NP_073318 ↗
- Protein ID:
- DNA_packaging_tegument_protein_UL25
- Kingdom:
- euk
Quality
74.9
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Mardivirus›
Meleagrid_alphaherpesvirus_1
TaxID: 37108
Cluster
View cluster (77 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 179-225_461-479_493-586
Domain cluster:
rep: DNA_packaging_tegument_protein_UL25__YP_001033953__Gallid_alphaherpesvirus_2__10390__D170-226_378-390_457-474_492-502_558-583
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01499.22 best | Herpes_UL25 | 72.3 | 4.80e-20 | 58.1% | 17.1% |
| PF01499.22 | Herpes_UL25 | 49.8 | 3.10e-13 | 30.0% | 7.9% |
D2
medium
residues 226-280_434-460
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01499.22 best | Herpes_UL25 | 45.1 | 8.00e-12 | 73.2% | 11.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2id3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 44.0 | 3.63e-01 | 72.0% | 61.3% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 44.0 | 4.01e-01 | 82.9% | 94.6% |
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.54 | 30.0 | 3.10e-01 | 95.1% | 56.0% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.54 | 27.0 | 3.71e-01 | 87.8% | 93.3% |
| 6fmhB01 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.51 | 42.0 | 3.50e-01 | 100.0% | 75.6% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3000229 | 3579.1.1.1 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › Oxidored_q3 | 0.54 | 33.0 | 3.49e-01 | 97.6% | 68.0% |
| 3832084 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.53 | 31.0 | 3.29e-01 | 97.6% | 62.7% |
| 3340080 | 103.4.1.2 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M | 0.52 | 36.0 | 3.25e-01 | 74.4% | 56.7% |
| 3499348 | 6076.1.1.1 ↗ | alpha arrays › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme › UBA_E1_SCCH | 0.51 | 44.0 | 3.01e-01 | 97.6% | 72.6% |
D3
medium
residues 281-392
Domain cluster:
rep: DNA_packaging_tegument_protein_UL25__YP_053082__Equid_alphaherpesvirus_1__10326__D285-392
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01499.22 best | Herpes_UL25 | 99.2 | 3.30e-28 | 99.1% | 19.6% |