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DNA_packaging_tegument_protein_UL25

Euk-Vir

Aotine_betaherpesvirus_1

DNA_packaging_tegument_protein_UL25__YP_004940094__Aotine_betaherpesvirus_1__50290

Identity

Accession:
YP_004940094 ↗
Protein ID:
DNA_packaging_tegument_protein_UL25
Kingdom:
euk

Quality

76.4 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Aotine_betaherpesvirus_1

TaxID: 50290

Cluster

View cluster (77 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-13_25-91
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j8bA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.82 48.0 4.53e-01 82.5% 51.1%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 53.0 4.38e-01 73.8% 43.8%
1wp1B01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.72 65.0 4.05e-01 97.5% 20.4%
5xilA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.66 49.0 4.15e-01 77.5% 54.7%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.66 48.0 4.18e-01 77.5% 56.1%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 41.0 2.93e-01 75.0% 81.9%
1tfkA00 3.10.450.200 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 30.0 2.83e-01 72.5% 44.7%
1fwxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 37.0 2.36e-01 70.0% 63.0%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.55 38.0 3.29e-01 77.5% 47.9%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.54 36.0 2.83e-01 76.2% 33.1%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3415741 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.80 70.0 5.71e-01 96.2% 73.8%
5001282 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.79 53.0 4.23e-01 86.3% 37.9%
4026701 180.1.1.1 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.76 45.0 3.27e-01 75.0% 24.0%
3077774 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.76 51.0 4.28e-01 70.0% 88.8%
4391637 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.72 45.0 4.34e-01 77.5% 56.7%
4994522 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.71 63.0 4.98e-01 97.5% 73.8%
None — 0.69 36.0 2.39e-01 73.8% 13.1%
3870421 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.69 62.0 4.73e-01 97.5% 74.9%
5001220 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.68 48.0 4.08e-01 73.8% 52.8%
3193221 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.67 59.0 4.64e-01 97.5% 78.2%
4381621 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.67 50.0 3.68e-01 77.5% 35.4%
4932715 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.67 48.0 4.04e-01 76.2% 50.4%
4998972 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.66 46.0 3.89e-01 72.5% 50.0%
3169644 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.66 54.0 4.30e-01 90.0% 81.9%
3875067 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 46.0 3.65e-01 81.2% 35.3%
4956219 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.65 44.0 3.84e-01 70.0% 52.5%
4600920 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.65 45.0 3.65e-01 72.5% 43.3%
3756160 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.65 45.0 3.63e-01 75.0% 39.3%
5069147 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.64 44.0 3.88e-01 72.5% 54.2%
3733718 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.64 43.0 4.30e-01 71.2% 76.5%
3634384 4292.2.1.2 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B 0.63 43.0 3.67e-01 71.2% 70.8%
5028078 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.60 41.0 2.82e-01 71.2% 56.4%
3241191 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 37.0 3.29e-01 70.0% 44.3%
4618205 604.1.1.150 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.56 46.0 3.97e-01 86.3% 57.5%
4012096 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 39.0 3.50e-01 76.2% 68.2%
3341115 5.1.3.128 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › TEN_NHL 0.54 46.0 3.53e-01 95.0% 52.4%
3604752 245.2.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.52 45.0 3.71e-01 96.2% 54.5%
3927286 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.52 36.0 3.78e-01 72.5% 77.3%
3186255 223.1.1.21 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.52 40.0 2.75e-01 86.3% 89.4%
D2 medium residues 244-265_427-621
PDB
Domain cluster: rep: DNA_packaging_tegument_protein_UL25__YP_009054940__Equid_alphaherpesvirus_3__80341__D158-233_380-417_449-491_503-595
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01499.22 best Herpes_UL25 116.5 1.90e-33 82.5% 32.1%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.60 18.0 2.85e-01 70.5% 63.0%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 23.0 3.52e-01 77.0% 90.5%
4lrvF00 1.10.1220.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE 0.55 26.0 3.95e-01 80.6% 100.0%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 28.0 3.41e-01 96.3% 74.1%
7x4eA01 1.10.1220.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE 0.53 27.0 3.84e-01 79.7% 100.0%
4an8A02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.52 24.0 3.18e-01 82.9% 75.4%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.51 25.0 3.53e-01 80.6% 97.1%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017845 632.7.1.67 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › YetF_N 0.57 22.0 3.49e-01 80.2% 88.2%
D3 medium residues 266-373_388-426
PDB
Domain cluster: rep: DNA_packaging_tegument_protein_UL25__YP_073790__Human_betaherpesvirus_7__10372__D209-378
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01499.22 best Herpes_UL25 85.3 5.40e-24 100.0% 26.3%