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DNA_packaging_tegument_protein_UL25
Euk-VirEquid_gammaherpesvirus_5
DNA_packaging_tegument_protein_UL25__YP_009118409__Equid_gammaherpesvirus_5__10371
Identity
- Accession:
- YP_009118409 ↗
- Protein ID:
- DNA_packaging_tegument_protein_UL25
- Kingdom:
- euk
Quality
76.7
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Percavirus›
Equid_gammaherpesvirus_5
TaxID: 10371
Cluster
View cluster (77 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 228-380
Domain cluster:
rep: DNA_packaging_tegument_protein_UL25__YP_010085894__Wood_mouse_herpesvirus__432370__D202-318
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01499.22 best | Herpes_UL25 | 166.0 | 2.00e-48 | 100.0% | 29.7% |
D2
medium
residues 134-173_194-219
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01499.22 best | Herpes_UL25 | 61.4 | 9.20e-17 | 100.0% | 14.1% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kg7B00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.62 | 46.0 | 4.06e-01 | 78.8% | 59.8% |
| 3dsqA01 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 39.0 | 4.09e-01 | 74.2% | 72.6% |
| 2r4gA02 | 1.10.10.1970 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TERT catalytic subunit-like | 0.59 | 37.0 | 3.83e-01 | 74.2% | 67.2% |
| 1c0pA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 44.0 | 3.12e-01 | 80.3% | 47.7% |
| 5lnkA00 | 1.20.58.1610 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 | 0.58 | 44.0 | 3.65e-01 | 81.8% | 47.8% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.57 | 41.0 | 3.83e-01 | 75.8% | 95.1% |
| 4ol8B03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.56 | 38.0 | 3.53e-01 | 72.7% | 82.2% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.56 | 41.0 | 3.42e-01 | 80.3% | 46.3% |
| 2mgwA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.53 | 28.0 | 3.14e-01 | 74.2% | 65.4% |
| 1z6oA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 43.0 | 3.08e-01 | 97.0% | 65.1% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4306757 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.58 | 44.0 | 3.78e-01 | 83.3% | 51.4% |
| 3289544 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.57 | 31.0 | 3.19e-01 | 93.9% | 52.3% |
| 5044109 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.56 | 31.0 | 3.06e-01 | 92.4% | 48.6% |
| 3228432 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.55 | 45.0 | 4.72e-01 | 95.5% | 100.0% |
| 3268173 | 5050.1.1.4 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nucleoside_tran | 0.55 | 38.0 | 2.79e-01 | 97.0% | 25.9% |
| 4958742 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 39.0 | 3.21e-01 | 77.3% | 43.2% |
| 2393002 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.53 | 42.0 | 3.07e-01 | 92.4% | 76.7% |
| 4671217 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.52 | 39.0 | 3.40e-01 | 81.8% | 53.3% |
| 3201282 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.52 | 34.0 | 3.50e-01 | 77.3% | 69.2% |
| 3750743 | 103.15.1.3 ↗ | alpha arrays › RuvA-C › Mitoribosomal protein mS23 › Mitoribosomal protein mS23 › MRP-S23, MRP-S25 | 0.52 | 36.0 | 2.88e-01 | 92.4% | 35.6% |
| 3326939 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.51 | 35.0 | 3.12e-01 | 86.4% | 48.0% |
| 3905181 | 632.11.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DOCK_N | 0.50 | 42.0 | 3.31e-01 | 92.4% | 82.1% |
| 3543771 | 632.2.1.44 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › BTB | 0.50 | 39.0 | 3.37e-01 | 84.8% | 59.0% |
D3
medium
residues 174-193_436-535
Domain cluster:
rep: DNA_packaging_tegument_protein_UL25__YP_010085894__Wood_mouse_herpesvirus__432370__D384-441_460-491
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01499.22 best | Herpes_UL25 | 106.7 | 1.80e-30 | 84.2% | 17.5% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.57 | 30.0 | 3.75e-01 | 83.3% | 88.1% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.54 | 32.0 | 3.95e-01 | 92.5% | 94.6% |
| 2f07B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 37.0 | 3.16e-01 | 71.7% | 93.9% |
| 3fnbA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.51 | 37.0 | 3.81e-01 | 100.0% | 79.8% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3546135 | 10.12.1.108 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › POPDC1-3 | 0.62 | 37.0 | 4.72e-01 | 91.7% | 97.3% |
| 3883211 | 541.1.1.0 ↗ | alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit | 0.62 | 37.0 | 3.86e-01 | 90.0% | 62.6% |
| 3702450 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.59 | 39.0 | 4.26e-01 | 70.8% | 82.0% |
| 3788601 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.58 | 42.0 | 2.80e-01 | 74.2% | 59.2% |
| 3692484 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.54 | 39.0 | 3.31e-01 | 75.0% | 79.5% |
| 4661038 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.53 | 40.0 | 3.36e-01 | 79.2% | 72.1% |
| 3961831 | 103.4.1.7 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › DUF1290 | 0.53 | 36.0 | 3.78e-01 | 87.5% | 78.1% |
| 3724006 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 37.0 | 3.24e-01 | 75.8% | 84.5% |
| 3182954 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 38.0 | 3.26e-01 | 78.3% | 82.0% |
| 4547736 | 604.12.1.111 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF27331 | 0.51 | 34.0 | 3.84e-01 | 91.7% | 94.1% |
| 3176842 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 39.0 | 3.24e-01 | 82.5% | 70.0% |
| 4936234 | 3542.1.1.2 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › SPP | 0.51 | 38.0 | 3.19e-01 | 80.8% | 43.1% |
| 5047042 | 6155.1.1.24 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF2085 | 0.51 | 39.0 | 3.90e-01 | 100.0% | 80.8% |