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DNA_packaging_tegument_protein_UL25

Euk-Vir

Spheniscid_alphaherpesvirus_1

DNA_packaging_tegument_protein_UL25__YP_009342380__Spheniscid_alphaherpesvirus_1__2560777

Identity

Accession:: YP_009342380 ↗
Protein ID:: DNA_packaging_tegument_protein_UL25
Kingdom:: euk

Quality

73.7 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Spheniscid_alphaherpesvirus_1

TaxID: 2560777

Cluster

View cluster (77 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 231-371

PDB

Domain cluster: rep: DNA_packaging_tegument_protein_UL25__YP_010085894__Wood_mouse_herpesvirus__432370__D202-318

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01499.22 best	Herpes_UL25	92.0	5.10e-26	100.0%	25.4%

D2 medium residues 49-103

PDB

Domain cluster: rep: DNA_packaging_tegument_protein_UL25__YP_009046523__Falconid_herpesvirus_1__1510155__D46-98

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01499.22 best	Herpes_UL25	33.0	3.90e-08	100.0%	9.0%

D3 medium residues 372-398_462-560

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01499.22 best	Herpes_UL25	73.4	2.10e-20	80.2%	16.4%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1x04A00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.59	41.0	3.54e-01	71.4%	82.5%
4l8iB00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.58	32.0	3.40e-01	74.6%	58.9%
1u00A02	1.20.1270.10	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.56	36.0	4.05e-01	73.8%	84.4%
2v0oB00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.55	44.0	3.41e-01	84.9%	79.0%
2ds2D01	1.10.110.10	Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins	0.54	22.0	3.04e-01	70.6%	75.4%
2b0hA01	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.54	40.0	4.03e-01	76.2%	93.0%
3ihuA02	1.20.120.530	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like	0.53	33.0	3.20e-01	98.4%	56.1%
2w02B01	1.10.150.640	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle	0.52	31.0	3.93e-01	77.8%	100.0%
2hujA00	1.20.120.440	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like	0.52	38.0	3.85e-01	74.6%	96.8%
3agtA00	1.20.120.50	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like	0.51	41.0	4.11e-01	88.9%	97.0%
1tqgA00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.51	36.0	3.92e-01	73.0%	96.2%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4092193	3755.4.1.53 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › CemA	0.58	34.0	3.17e-01	87.3%	46.5%
3209446	632.22.1.131 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › SOG2	0.57	43.0	4.20e-01	77.0%	78.5%
3258488	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.56	37.0	4.17e-01	73.8%	85.0%
3467431	5069.1.1.7 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561	0.56	43.0	3.67e-01	81.0%	77.0%
3528480	150.1.1.56 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DGKD_4H	0.54	37.0	3.83e-01	77.0%	73.3%
3461715	632.1.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain	0.53	38.0	4.19e-01	73.8%	94.0%
5075952	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.53	40.0	4.05e-01	79.4%	97.7%
3266812	3291.1.1.211 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › EMC3_TMCO1	0.53	38.0	3.51e-01	73.8%	59.4%
3497911	633.23.1.0 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin	0.52	37.0	3.65e-01	70.6%	79.3%
3428852	3755.4.1.0 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain	0.52	40.0	3.92e-01	80.2%	100.0%
2080122	601.4.1.4 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › PilJ	0.51	38.0	4.04e-01	77.0%	100.0%
5080053	601.14.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin	0.51	43.0	4.25e-01	92.1%	100.0%
3701767	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.51	40.0	3.55e-01	84.9%	91.9%
5063259	601.33.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD	0.50	38.0	3.91e-01	81.7%	87.2%