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DNA_packaging_tegument_protein_UL25
Euk-VirWood_mouse_herpesvirus
DNA_packaging_tegument_protein_UL25__YP_010085894__Wood_mouse_herpesvirus__432370
Identity
- Accession:
- YP_010085894 ↗
- Protein ID:
- DNA_packaging_tegument_protein_UL25
- Kingdom:
- euk
Quality
80.5
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Rhadinovirus›
Wood_mouse_herpesvirus
TaxID: 432370
Cluster
View cluster (77 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 202-318
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01499.22 best | Herpes_UL25 | 70.1 | 2.20e-19 | 100.0% | 24.5% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6i3mE01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.56 | 32.0 | 3.05e-01 | 84.6% | 45.3% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 24.0 | 2.98e-01 | 100.0% | 66.7% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2799838 | 3424.1.1.1 ↗ | alpha arrays › Virion protein UL25 › Virion protein UL25 › Virion protein UL25 › Herpes_UL25 | 0.93 | 90.0 | 5.96e-01 | 100.0% | 30.4% |
| 3786107 | 109.4.1.1376 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U3_assoc_6, HAT_PRP39_N | 0.55 | 33.0 | 2.30e-01 | 88.9% | 16.8% |
D2
medium
residues 122-195_319-367_442-459_492-516
Domain cluster:
rep: ORF19__YP_010084561__Macaca_nemestrina_rhadinovirus_2__123630__D151-194_347-396_427-459_528-547
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01499.22 best | Herpes_UL25 | 34.8 | 1.10e-08 | 54.2% | 9.4% |
| PF01499.22 | Herpes_UL25 | 55.9 | 4.20e-15 | 44.6% | 11.9% |
D3
medium
residues 384-441_460-491
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01499.22 best | Herpes_UL25 | 36.6 | 3.00e-09 | 67.8% | 11.2% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rzeA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 42.0 | 3.21e-01 | 100.0% | 95.5% |