←Back to structures

DNA_packaging_tegument_protein

Euk-Vir

Macropodid_alphaherpesvirus_1

DNA_packaging_tegument_protein__YP_009227250__Macropodid_alphaherpesvirus_1__137443

Identity

Accession:
YP_009227250 ↗
Protein ID:
DNA_packaging_tegument_protein
Kingdom:
euk

Quality

75.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Macropodid_alphaherpesvirus_1

TaxID: 137443

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-46_61-167_387-426
PDB
Domain cluster: rep: ORF32__YP_010084395__Retroperitoneal_fibromatosis-associated_herpesvirus__111469__D1-125_229-267
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF04559.18 best Herpes_UL17 138.7 4.00e-40 80.3% 28.1%
PF04559.18 Herpes_UL17 32.2 7.60e-08 22.8% 7.2%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wfuA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 31.0 4.35e-01 89.1% 87.4%
2a74A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.67 33.0 4.40e-01 90.2% 85.7%
3wnoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 32.0 4.28e-01 90.2% 85.0%
4ofkB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 31.0 4.17e-01 90.2% 80.8%
1ex0A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 30.0 4.16e-01 90.7% 88.4%
3l9bA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.60 39.0 4.61e-01 89.6% 97.6%
1cqkA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 29.0 3.77e-01 90.7% 82.2%
4npjB02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.58 37.0 4.24e-01 91.2% 85.9%
2nq3A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.58 39.0 4.51e-01 91.2% 97.7%
3o3uN03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 31.0 3.91e-01 90.7% 87.4%
4emoC00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 36.0 4.33e-01 97.9% 100.0%
3k5rA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.56 30.0 3.73e-01 90.2% 82.9%
2fboJ02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 29.0 3.81e-01 89.1% 87.6%
5oj2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 26.0 3.47e-01 90.2% 84.0%
1grwA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 30.0 3.63e-01 90.7% 82.3%
4jqrA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.54 32.0 3.13e-01 90.2% 50.5%
7altB01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 4.52e-01 88.6% 100.0%
1hw7A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.51 42.0 4.38e-01 94.8% 95.4%
6w5yC01 3.90.310.10 Alpha Beta › Alpha-Beta Complex › Viral Glycoprotein Gp70 › ENV polyprotein, receptor-binding domain 0.51 35.0 3.99e-01 89.1% 93.1%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5058820 11.1.1.246 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 0.68 33.0 3.54e-01 89.6% 52.1%
5056721 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 36.0 4.39e-01 91.7% 83.2%
4981226 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 32.0 4.12e-01 90.2% 81.8%
4968303 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 32.0 4.26e-01 90.2% 90.0%
3924156 11.2.1.16 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PKC_C2 0.64 41.0 4.97e-01 87.6% 100.0%
5038463 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 34.0 4.38e-01 90.7% 90.0%
3608427 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.63 38.0 4.79e-01 88.6% 100.0%
5060734 11.1.1.138 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NPCBM_assoc 0.63 32.0 4.08e-01 90.2% 82.7%
5068115 11.1.1.658 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_VWA7 0.62 31.0 4.03e-01 90.2% 84.8%
4969604 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 33.0 4.23e-01 90.2% 88.2%
4965167 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 28.0 3.80e-01 90.2% 83.0%
3705689 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.62 39.0 4.63e-01 91.2% 93.8%
5032694 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 32.0 4.09e-01 89.6% 85.5%
5059338 11.1.1.33 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arch_flagellin 0.61 34.0 3.92e-01 85.0% 72.1%
4938899 11.1.1.1424 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 0.61 36.0 4.31e-01 90.7% 86.2%
4968646 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 31.0 3.93e-01 90.2% 80.9%
5061213 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 31.0 3.91e-01 89.6% 80.9%
3809348 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 37.0 4.40e-01 78.8% 89.2%
5061053 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 31.0 4.04e-01 90.7% 86.4%
3786844 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 33.0 4.00e-01 90.7% 80.8%
3595908 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.60 39.0 4.63e-01 89.1% 97.7%
3606868 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.59 38.0 4.48e-01 91.2% 93.8%
3712315 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.59 39.0 4.16e-01 91.2% 75.8%
4969083 11.1.1.138 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NPCBM_assoc 0.59 31.0 3.92e-01 90.7% 84.5%
3996028 11.2.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › MNNL 0.59 37.0 4.52e-01 83.4% 100.0%
3347639 11.2.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 0.59 41.0 4.69e-01 92.2% 100.0%
4969901 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 30.0 3.80e-01 89.1% 82.7%
3484011 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.58 39.0 4.29e-01 91.7% 83.2%
3591321 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.58 41.0 4.67e-01 88.1% 96.6%
3415791 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 34.0 4.13e-01 90.7% 90.0%
3494635 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.58 39.0 4.28e-01 91.7% 83.2%
3663557 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.58 39.0 4.38e-01 89.6% 88.6%
5060541 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 32.0 3.97e-01 90.2% 85.8%
3863526 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.58 30.0 3.79e-01 89.1% 82.6%
4981227 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 31.0 3.84e-01 90.2% 84.3%
3716579 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.57 37.0 4.47e-01 89.6% 100.0%
3781150 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 33.0 3.79e-01 90.2% 75.2%
3397223 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 32.0 3.80e-01 90.7% 81.6%
5062295 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 32.0 3.87e-01 90.7% 82.3%
3738638 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 46.0 4.77e-01 95.3% 94.4%
5069763 11.1.1.138 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NPCBM_assoc 0.56 28.0 3.60e-01 90.7% 80.9%
3214349 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 38.0 4.33e-01 89.6% 97.0%
3629335 11.1.1.13 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Motile_Sperm 0.55 29.0 3.66e-01 89.1% 82.5%
3606960 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 36.0 3.96e-01 76.7% 83.9%
3736368 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 38.0 3.84e-01 89.1% 73.8%
3890583 11.2.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2-C2_1 0.52 40.0 4.24e-01 96.4% 93.3%
3514750 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.51 30.0 3.66e-01 94.3% 95.5%
3561027 11.1.1.488 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4707 0.51 35.0 3.91e-01 100.0% 88.7%
3909301 10.32.1.77 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Reelin_subrepeat-B 0.51 29.0 3.45e-01 89.1% 81.6%
3598151 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 43.0 3.99e-01 90.7% 96.0%
3273590 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.50 39.0 4.19e-01 87.6% 93.5%
3626417 11.1.1.13 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Motile_Sperm 0.50 30.0 3.44e-01 90.7% 79.3%
D2 medium residues 169-214_230-251_354-386
PDB
Domain cluster: rep: DNA_packaging_tegument_protein_UL17__YP_009137091__Human_alphaherpesvirus_1__10298__D161-204_230-243_336-369
D3 medium residues 427-484
PDB
Domain cluster: rep: DNA_packaging_tegument_protein_UL17__YP_009042079__Fruit_bat_alphaherpesvirus_1__1343901__D438-478
D4 medium residues 485-517_542-576_687-700
PDB
Domain cluster: rep: DNA_packaging_tegument_protein_UL17__YP_009137091__Human_alphaherpesvirus_1__10298__D469-503_538-573_680-694
D5 medium residues 518-541_577-686
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04559.18 best Herpes_UL17 74.0 1.60e-20 94.0% 15.3%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h40A01 2.60.40.3730 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.50 40.0 3.79e-01 83.6% 86.1%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3469605 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.50 36.0 3.69e-01 72.4% 76.2%
185777 11.1.4.28 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Mfa_like_2 0.50 38.0 3.68e-01 79.9% 85.9%
3519897 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 35.0 3.55e-01 70.1% 85.4%