←Back to structures
DNA_packaging_terminase_subunit_1
Euk-VirGallid_alphaherpesvirus_2
DNA_packaging_terminase_subunit_1__YP_001033943__Gallid_alphaherpesvirus_2__10390
Identity
- Accession:
- YP_001033943 ↗
- Protein ID:
- DNA_packaging_terminase_subunit_1
- Kingdom:
- euk
Quality
70.8
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Mardivirus›
Gallid_alphaherpesvirus_2
TaxID: 10390
Cluster
View cluster (63 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 501-733
Domain cluster:
rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00331__D317-603
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02499.23 best | DNA_pack_C | 283.6 | 3.20e-84 | 100.0% | 62.1% |
D2
medium
residues 161-185_203-255
Domain cluster:
rep: DNA_packaging_terminase_subunit_1__NP_073308__Meleagrid_alphaherpesvirus_1__37108__D159-254
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02500.23 best | DNA_pack_N | 78.5 | 9.90e-22 | 100.0% | 28.0% |
D3
medium
residues 256-415
Domain cluster:
rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02500.23 best | DNA_pack_N | 171.1 | 5.60e-50 | 60.6% | 36.2% |
| PF02499.23 | DNA_pack_C | 48.0 | 1.40e-12 | 23.8% | 10.8% |