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DNA_packaging_terminase_subunit_1
Euk-VirSaimiriine_betaherpesvirus_4
DNA_packaging_terminase_subunit_1__YP_004940252__Saimiriine_betaherpesvirus_4__1535247
Identity
- Accession:
- YP_004940252 ↗
- Protein ID:
- DNA_packaging_terminase_subunit_1
- Kingdom:
- euk
Quality
74.4
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Cytomegalovirus›
Saimiriine_betaherpesvirus_4
TaxID: 1535247
Cluster
View cluster (63 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 442-604_647-670
Domain cluster:
rep: tegument_protein_UL16__YP_010087586__Cervid_alphaherpesvirus_3__2115790__D494-638_653-663
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02499.23 best | DNA_pack_C | 226.4 | 8.00e-67 | 87.7% | 46.7% |
D2
medium
residues 116-205
Domain cluster:
rep: putative_terminase__YP_009344911__Murine_roseolovirus__1940555__D119-184
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02500.23 best | DNA_pack_N | 93.6 | 2.30e-26 | 100.0% | 32.1% |
D3
medium
residues 206-369
Domain cluster:
rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03237.22 best | Terminase_6N | 33.2 | 5.80e-08 | 86.6% | 63.3% |
| PF02500.23 | DNA_pack_N | 158.6 | 3.70e-46 | 57.9% | 35.8% |
| PF02499.23 | DNA_pack_C | 57.2 | 2.30e-15 | 26.8% | 12.5% |
D4
medium
residues 370-424
D5
medium
residues 425-441_605-646
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02499.23 best | DNA_pack_C | 45.0 | 1.10e-11 | 98.3% | 11.4% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ifeA02 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.66 | 57.0 | 3.88e-01 | 100.0% | 94.3% |
| 5m1pB00 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.58 | 49.0 | 3.53e-01 | 100.0% | 91.5% |
| 1khvA04 | 6.10.140.320 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 37.0 | 3.84e-01 | 89.8% | 85.2% |
| 2r6fA06 | 1.20.1580.10 | Mainly Alpha › Up-down Bundle › ABC transporter ATPase like fold › ABC transporter ATPase like domain | 0.51 | 40.0 | 3.25e-01 | 96.6% | 56.5% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5010220 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 28.0 | 3.02e-01 | 91.5% | 45.3% |
| None | — | 0.60 | 52.0 | 3.24e-01 | 100.0% | 85.1% | |
| 3364232 | 101.1.2.65 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 | 0.54 | 31.0 | 2.83e-01 | 71.2% | 38.8% |
| 3478961 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.53 | 44.0 | 2.77e-01 | 94.9% | 27.0% |
| 3223387 | 101.1.2.65 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 | 0.53 | 31.0 | 2.88e-01 | 71.2% | 45.3% |
| 4043003 | 601.7.1.6 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase | 0.50 | 42.0 | 3.14e-01 | 100.0% | 47.6% |