←Back to structures
DNA_packaging_terminase_subunit_1
Euk-VirEquid_gammaherpesvirus_5
DNA_packaging_terminase_subunit_1__YP_009118419__Equid_gammaherpesvirus_5__10371
Identity
- Accession:
- YP_009118419 ↗
- Protein ID:
- DNA_packaging_terminase_subunit_1
- Kingdom:
- euk
Quality
73.1
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Percavirus›
Equid_gammaherpesvirus_5
TaxID: 10371
Cluster
View cluster (63 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 447-684
Domain cluster:
rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00331__D317-603
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02499.23 best | DNA_pack_C | 326.8 | 2.40e-97 | 100.0% | 68.7% |
D2
medium
residues 32-73_95-140
D3
medium
residues 141-214
Domain cluster:
rep: cleavage_packaging_protein__YP_004207870__Cricetid_gammaherpesvirus_2__1605972__D137-212
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02500.23 best | DNA_pack_N | 83.9 | 2.20e-23 | 100.0% | 28.0% |
D4
medium
residues 215-390
Domain cluster:
rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03237.22 best | Terminase_6N | 31.8 | 1.60e-07 | 87.5% | 57.7% |
| PF02500.23 | DNA_pack_N | 173.2 | 1.30e-50 | 56.2% | 36.2% |
| PF02499.23 | DNA_pack_C | 78.1 | 1.00e-21 | 29.5% | 14.8% |
D5
medium
residues 391-443