DNA_packaging_terminase_subunit_1

Euk-Vir

Human_alphaherpesvirus_1

DNA_packaging_terminase_subunit_1__YP_009137089__Human_alphaherpesvirus_1__10298

Identity

71.8 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Human_alphaherpesvirus_1

TaxID: 10298

View cluster (63 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-149

PDB

D2 high residues 417-472

PDB

D3 high residues 490-663_707-729

PDB

Domain cluster: rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00331__D317-603

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02499.23 best	DNA_pack_C	224.1	4.10e-66	89.3%	47.3%

D4 medium residues 250-413

PDB

Domain cluster: rep: KX578043.1__AOT27930.1__X__00015__D87-267

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03237.22 best	Terminase_6N	22.9	8.40e-05	91.5%	65.1%
PF02500.23	DNA_pack_N	174.0	7.40e-51	59.8%	36.5%
PF02499.23	DNA_pack_C	59.2	5.60e-16	25.0%	11.7%

D5 medium residues 473-489_664-706

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_1__YP_004940252__Saimiriine_betaherpesvirus_4__1535247__D425-441_605-646

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02499.23 best	DNA_pack_C	41.3	1.60e-10	96.7%	12.5%