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DNA_packaging_terminase_subunit_1
Euk-VirTestudinid_alphaherpesvirus_3
DNA_packaging_terminase_subunit_1__YP_009176923__Testudinid_alphaherpesvirus_3__2560801
Identity
- Accession:
- YP_009176923 ↗
- Protein ID:
- DNA_packaging_terminase_subunit_1
- Kingdom:
- euk
Quality
74.0
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Scutavirus›
Testudinid_alphaherpesvirus_3
TaxID: 2560801
Cluster
View cluster (63 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-137
D2
high
residues 467-693
Domain cluster:
rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00331__D317-603
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02499.23 best | DNA_pack_C | 301.0 | 1.70e-89 | 99.6% | 62.4% |
D3
medium
residues 172-224
Domain cluster:
rep: DNA_packaging_terminase_subunit_1__NP_944422__Psittacid_alphaherpesvirus_1__50294__D199-219_264-310
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02500.23 best | DNA_pack_N | 54.1 | 2.70e-14 | 100.0% | 19.2% |
D4
medium
residues 225-387
Domain cluster:
rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05127.22 best | NAT10_TcmA_helicase | 24.2 | 3.70e-05 | 95.7% | 67.8% |
| PF03237.22 | Terminase_6N | 31.5 | 2.00e-07 | 92.0% | 65.1% |
| PF02500.23 | DNA_pack_N | 160.9 | 7.20e-47 | 59.5% | 36.2% |
| PF02499.23 | DNA_pack_C | 56.9 | 2.70e-15 | 25.1% | 11.7% |
D5
medium
residues 388-466