DNA_packaging_terminase_subunit_1

Euk-Vir

Canid_alphaherpesvirus_1

DNA_packaging_terminase_subunit_1__YP_009252269__Canid_alphaherpesvirus_1__170325

Identity

73.5 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Canid_alphaherpesvirus_1

TaxID: 170325

View cluster (63 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 250-409

PDB

Domain cluster: rep: KX578043.1__AOT27930.1__X__00015__D87-267

Pfam (4)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05127.22 best	NAT10_TcmA_helicase	23.7	5.50e-05	94.4%	67.8%
PF03237.22	Terminase_6N	29.7	7.00e-07	91.2%	65.1%
PF02500.23	DNA_pack_N	175.3	3.00e-51	61.3%	36.5%
PF02499.23	DNA_pack_C	49.7	4.30e-13	23.1%	10.5%

D2 high residues 493-728

PDB

Domain cluster: rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00331__D317-603

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02499.23 best	DNA_pack_C	306.7	3.20e-91	100.0%	63.8%

D3 medium residues 154-178_202-249

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_1__NP_944422__Psittacid_alphaherpesvirus_1__50294__D199-219_264-310

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02500.23 best	DNA_pack_N	70.4	3.00e-19	100.0%	28.0%

D4 medium residues 414-492

PDB