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DNA_packaging_terminase_subunit_1
Euk-VirSpheniscid_alphaherpesvirus_1
DNA_packaging_terminase_subunit_1__YP_009342389__Spheniscid_alphaherpesvirus_1__2560777
Identity
- Accession:
- YP_009342389 ↗
- Protein ID:
- DNA_packaging_terminase_subunit_1
- Kingdom:
- euk
Quality
70.6
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Mardivirus›
Spheniscid_alphaherpesvirus_1
TaxID: 2560777
Cluster
View cluster (63 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 495-641_655-667_708-730
Domain cluster:
rep: tegument_protein_UL16__YP_010087586__Cervid_alphaherpesvirus_3__2115790__D494-638_653-663
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02499.23 best | DNA_pack_C | 181.7 | 3.10e-53 | 87.4% | 40.2% |
D2
medium
residues 32-176
D3
medium
residues 201-250
Domain cluster:
rep: DNA_packaging_terminase_subunit_1__NP_944422__Psittacid_alphaherpesvirus_1__50294__D199-219_264-310
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02500.23 best | DNA_pack_N | 61.6 | 1.40e-16 | 100.0% | 18.4% |
D4
medium
residues 251-433
Domain cluster:
rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03237.22 best | Terminase_6N | 28.2 | 2.00e-06 | 90.7% | 65.1% |
| PF02500.23 | DNA_pack_N | 172.4 | 2.30e-50 | 53.0% | 36.2% |
| PF02499.23 | DNA_pack_C | 95.4 | 5.40e-27 | 33.3% | 17.4% |
D5
medium
residues 482-494_642-654_668-707
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02499.23 best | DNA_pack_C | 30.2 | 3.60e-07 | 98.5% | 10.8% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dsyD00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.69 | 37.0 | 3.49e-01 | 86.4% | 42.0% |
| 7sk7A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.57 | 42.0 | 2.88e-01 | 80.3% | 38.7% |
| 3fn2A00 | 3.30.2200.10 | Alpha Beta › 2-Layer Sandwich › histidine kinase doma clostridium symbiosum atcc 14940 › histidine kinase doma clostridium symbiosum atcc 14940 | 0.56 | 49.0 | 4.34e-01 | 100.0% | 80.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4269320 | 5046.1.1.253 ↗ | extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b › Ycf1 | 0.54 | 40.0 | 3.09e-01 | 78.8% | 52.0% |
| 3628950 | 5001.1.1.60 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx | 0.51 | 37.0 | 2.57e-01 | 77.3% | 87.2% |
| 3782734 | 59.1.1.11 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Paf1 | 0.51 | 35.0 | 2.60e-01 | 74.2% | 43.3% |
| 4993637 | 7516.1.1.23 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF2064 | 0.50 | 37.0 | 2.55e-01 | 80.3% | 76.4% |