DNA_packaging_terminase_subunit_1

Euk-Vir

Rhinolophus_gammaherpesvirus_1

DNA_packaging_terminase_subunit_1__YP_009551839__Rhinolophus_gammaherpesvirus_1__2054179

Identity

76.1 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Percavirus› Rhinolophus_gammaherpesvirus_1

TaxID: 2054179

View cluster (63 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-134

PDB

D2 high residues 453-679

PDB

Domain cluster: rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00331__D317-603

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02499.23 best	DNA_pack_C	315.0	9.40e-94	100.0%	65.5%

D3 medium residues 135-209

PDB

Domain cluster: rep: cleavage_packaging_protein__YP_004207870__Cricetid_gammaherpesvirus_2__1605972__D137-212

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02500.23 best	DNA_pack_N	88.0	1.20e-24	100.0%	28.4%

D4 medium residues 210-374

PDB

Domain cluster: rep: KX578043.1__AOT27930.1__X__00015__D87-267

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03237.22 best	Terminase_6N	30.3	4.70e-07	89.1%	51.6%
PF02500.23	DNA_pack_N	190.7	6.00e-56	60.6%	36.9%
PF02499.23	DNA_pack_C	53.3	3.40e-14	24.2%	11.4%

D5 medium residues 375-428

PDB