DNA_packaging_terminase_subunit_1

Euk-Vir

Equid_alphaherpesvirus_1

DNA_packaging_terminase_subunit_1__YP_053090__Equid_alphaherpesvirus_1__10326

Identity

71.0 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Equid_alphaherpesvirus_1

TaxID: 10326

View cluster (63 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 157-180_198-251

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_1__NP_944422__Psittacid_alphaherpesvirus_1__50294__D199-219_264-310

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02500.23 best	DNA_pack_N	84.0	2.10e-23	100.0%	27.3%

D2 medium residues 252-417

PDB

Domain cluster: rep: KX578043.1__AOT27930.1__X__00015__D87-267

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03237.22 best	Terminase_6N	27.5	3.40e-06	90.4%	65.1%
PF02500.23	DNA_pack_N	171.9	3.30e-50	58.4%	36.2%
PF02499.23	DNA_pack_C	68.5	8.40e-19	26.5%	12.5%

D3 medium residues 418-474

PDB

D4 medium residues 475-497_638-706

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_1__YP_009342389__Spheniscid_alphaherpesvirus_1__2560777__D482-494_642-654_668-707

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02499.23 best	DNA_pack_C	84.0	1.60e-23	77.2%	19.7%

D5 medium residues 498-637_707-734

PDB

Domain cluster: rep: tegument_protein_UL16__YP_010087586__Cervid_alphaherpesvirus_3__2115790__D494-638_653-663

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02499.23 best	DNA_pack_C	177.8	4.80e-52	83.9%	37.0%